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Align VIMSS54085 to PF01170 (UPF0020)

VIMSS54085 has 708 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
      1e-69  220.3   0.0    1.2e-64  203.7   0.0    2.3  2  VIMSS54085  


Domain annotation for each sequence (and alignments):
>> VIMSS54085  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.7   0.0   1.2e-64   1.2e-64       1     196 [.     162     374 ..     162     375 .. 0.95
   2 !   14.3   0.0   1.3e-06   1.3e-06      79     168 ..     569     661 ..     539     685 .. 0.82

  Alignments for each domain:
  == domain 1  score: 203.7 bits;  conditional E-value: 1.2e-64
                 -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH.....HH--EEE CS
     UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear.....aelklyg 81 
                 RgyR  +g+apL+etLAaa++ ++gw++ +pllDPmCGsGt+lIEaa+++aniapgl r+++++             +k+ea  + +     +e ++yg
  VIMSS54085 162 RGYRTEAGKAPLRETLAAAIILRSGWDASKPLLDPMCGSGTLLIEAAMMAANIAPGLQRKKWGFealedfepelwasVKSEASVQGKrgvkkVETHFYG 260
                 9**************************************************************************998888877766677555666*** PP

                 EES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--STTS.---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC--- CS
     UPF0020  82 sDldrrvvqgareNaekagvgdliefsqadaakLrlkeg.evdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekaleer 179
                 +D+d+rv+q+a++Na++agv++li+f   daak++++e+   +++++npPYGerlg+++ l +LY +f+ +lk ++ g    ++++s++ +l ++l++r
  VIMSS54085 261 VDNDNRVLQTAKDNARRAGVEELISFTLGDAAKVKRPENfAEGIVICNPPYGERLGTHPGLIALYTAFGAQLKAEFGG--CHASIFSSSDELLSCLRMR 357
                 ***********************************77766889*********************************99..******************* PP

                 ESEEEEEEETTEEEEEE CS
     UPF0020 180 alrkvkeknvklglllk 196
                 a +++k++n+ l +++k
  VIMSS54085 358 ADKQFKLNNGALPCHQK 374
                 **************997 PP

  == domain 2  score: 14.3 bits;  conditional E-value: 1.3e-06
                 EEEEES-HHHHHHHHHHHH.HTT-GGGEEEEE--GGG--.STTS---EEEE---...-------HHHHHHHHHHHHHHHHHH-TT..-EEEEEES CS
     UPF0020  79 lygsDldrrvvqgareNae.kagvgdliefsqadaakLr.lkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltse 168
                    +D+ + +++ a+eN + + +vg + +++qad  +   ++++++d+i  +pP     +r++++ ++++ +  +++ lkr lr +g +v+  s+
  VIMSS54085 569 TTTVDMSKTYLEWAKENMQlNGQVGRQHQYVQADCLQWLaNAQSQYDLIFIDPPtfsNSKRMEQTFDVQRDHVTLMTNLKRLLRPEGTIVF--SN 661
                 6789**************9456799999999*9998755478889*********6444789************************776654..33 PP



Or compare VIMSS54085 to CDD or PaperBLAST