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Align VIMSS544440 to PF01170 (UPF0020)

VIMSS544440 has 295 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-31   94.2   0.0    3.6e-30   91.2   0.0    2.0  1  VIMSS544440  


Domain annotation for each sequence (and alignments):
>> VIMSS544440  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.2   0.0   3.6e-30   3.6e-30       2     153 ..     123     243 ..     122     256 .. 0.92

  Alignments for each domain:
  == domain 1  score: 91.2 bits;  conditional E-value: 3.6e-30
                  SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHT CS
      UPF0020   2 gyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaeka 99 
                  + +++++p+++ +tLA +l++l+g+k+g +++DP+CG G+ilIEaal+g ++                           gsD+d++++++a++N+ ++
  VIMSS544440 123 HNKPCFHPSSIIPTLAKVLINLTGLKEG-TIYDPFCGIGGILIEAALMGFQVK--------------------------GSDIDEKMLECAKQNLLYY 193
                  6789*********************987.79**********************..........................******************* PP

                  T-GGGEEEEE--GGG--STTS---EEEE----------HHHHHHHHHHHHHHHH CS
      UPF0020 100 gvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelk 153
                  g++++  +++ da++L   +g  d+ivt+pPYG+  +  +++ +LY+ fl+++ 
  VIMSS544440 194 GIKEFELAKC-DARDLC-LDG--DAIVTDPPYGRYSKVYGNILELYKGFLSKAI 243
                  **99877776.******.665..99************************98764 PP



Or compare VIMSS544440 to CDD or PaperBLAST