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Align VIMSS544534 to PF01170 (UPF0020)

VIMSS544534 has 366 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    7.9e-43  132.6   0.0    1.1e-42  132.0   0.0    1.2  1  VIMSS544534  


Domain annotation for each sequence (and alignments):
>> VIMSS544534  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  132.0   0.0   1.1e-42   1.1e-42       1     192 [.     153     354 ..     153     358 .. 0.94

  Alignments for each domain:
  == domain 1  score: 132.0 bits;  conditional E-value: 1.1e-42
                  -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.......HHHHHHHHHH..HH--EEEEES-HHHH CS
      UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle.......lkaeaeeear..aelklygsDldrrvv 89 
                  R yR++ +pa L +t+A +l+rl++w+ g++llDP+CGsGti+IEaal  ++i+p   +  +++       + +e+e++++  +++k+ ++D+  +++
  VIMSS544534 153 RYYRVYYHPAGLAPTIANSLIRLTKWN-GQSLLDPLCGSGTIPIEAALYLREIPPLYRQYDKTFayqlnpdIIDEIEQSIKwdRKAKILCFDKFVKHM 249
                  78************************6.899***********************976666666688999999999999999988899*********** PP

                  HHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---ESEEEE CS
      UPF0020  90 qgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekaleeralrkvk 185
                  +ga+ N  +a+v+d++++s+ +  ++   l e+ +d i+tnpPYG++  + ++ ek ++ +  +++ +l+ +g l+ll ++++ + k +e+ ++  ++
  VIMSS544534 250 RGAELNCIHARVKDIVKVSKINLEDVDfkLGEKAIDYIITNPPYGIKAADREESEKVHEYLFYQAEYILKDNGVLALLSPHKEWVLKYAEKYNFTLKH 347
                  ************************9998888999**********************************************************999999 PP

                  EEETTEE CS
      UPF0020 186 eknvklg 192
                  e+ ++++
  VIMSS544534 348 EREIYHN 354
                  9988765 PP



Or compare VIMSS544534 to CDD or PaperBLAST