VIMSS5567242 has 374 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.1e-60 189.4 0.0 4.2e-60 188.9 0.0 1.2 1 VIMSS5567242
Domain annotation for each sequence (and alignments):
>> VIMSS5567242
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 188.9 0.0 4.2e-60 4.2e-60 1 196 [. 161 367 .. 161 368 .. 0.96
Alignments for each domain:
== domain 1 score: 188.9 bits; conditional E-value: 4.2e-60
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear..aelklygsD 83
RgyR ++g+ap+ketLAaal+rla+w+ ++pl+DP+CGsGti+IEa+l+++niapg++r+fv+e l++ea ++a +e+++y+ D
VIMSS5567242 161 RGYRLAQGEAPIKETLAAALIRLANWNGNTPLIDPFCGSGTIAIEACLIAQNIAPGFNRSFVSEtwdimpeglydtLRDEADQQADydKEVEVYAYD 257
9*********************************************************************************9999767777***** PP
UPF0020 84 ldrrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleera 180
+d+++v+ a++Nae+ g+g+ i+f+++d+ L +++ ++++npPYGer+g+ ++e++Y+ +++ +k++ + + +++++nk++e + +++a
VIMSS5567242 258 IDPEMVEIAKRNAEEVGLGEVIHFEVKDVNTLDIHTDKPIALIGNPPYGERIGDRDEVEEMYRYLGKLMKEHPNL---SEYILTSNKEFEFLTQRKA 351
*********************************7777778*******************************7776...8899*************** PP
UPF0020 181 lrkvkeknvklglllk 196
++++k++n++++++++
VIMSS5567242 352 TKRRKLFNGYIECTYY 367
*************986 PP
Or compare VIMSS5567242 to CDD or PaperBLAST