VIMSS5781046 has 364 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.2e-19 56.9 0.0 9.6e-18 50.7 0.0 3.1 2 VIMSS5781046
Domain annotation for each sequence (and alignments):
>> VIMSS5781046
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -2.6 0.0 0.2 0.2 140 160 .. 87 107 .. 85 111 .. 0.83
2 ! 50.7 0.0 9.6e-18 9.6e-18 12 170 .. 173 319 .. 164 330 .. 0.84
Alignments for each domain:
== domain 1 score: -2.6 bits; conditional E-value: 0.2
UPF0020 140 alekLYseflrelkrvlrggg 160
+ +kL++++++e+k++++ +g
VIMSS5781046 87 SDWKLWRKLGSEIKKEFKVEG 107
56899*********9998765 PP
== domain 2 score: 50.7 bits; conditional E-value: 9.6e-18
UPF0020 12 LketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNa....ekagvgdl 104
+ ++LA+ +v+l+g+++g+ +lDP+CG Gti E l+g +++ gsD d+++++ a++N+ ++ ++++
VIMSS5781046 173 IPPRLARIMVNLSGVRKGN-FLDPFCGIGTIVQEFVLQGLSAY--------------------------GSDRDEKAIRDAKKNLtwlrKEFHLKNS 242
6789************985.99******************999..........................***************9444457788999 PP
UPF0020 105 iefsqadaakLr.lkegevdvivtnpPY..........GerlgskkalekLYseflrelkrvlrgggrlvlltaenk 170
++++ da+kLr + +d+ivt+p Ge+++ +++l+++Y + +++++vl+++g+ v+++++++
VIMSS5781046 243 AHLEVCDARKLRrCLRTRFDAIVTEPYLgkplkrnpsrGEAIKLTNELDRFYYPVFESFSEVLKRNGKVVFVFPAYR 319
************956669******864422223333336677778889999999******************99876 PP
Or compare VIMSS5781046 to CDD or PaperBLAST