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Align VIMSS59498 to PF01170 (UPF0020)

VIMSS59498 has 725 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.8e-50  156.9   0.0    4.9e-47  146.3   0.0    2.4  2  VIMSS59498  


Domain annotation for each sequence (and alignments):
>> VIMSS59498  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.3   0.0   4.9e-47   4.9e-47       1     194 [.     165     380 ..     165     383 .. 0.92
   2 !    8.2   0.0   9.7e-05   9.7e-05      75     130 ..     586     642 ..     554     685 .. 0.81

  Alignments for each domain:
  == domain 1  score: 146.3 bits;  conditional E-value: 4.9e-47
                 -SSS-SS---SS-HHHHHHHHHHTT-....-TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH...HH--. CS
     UPF0020   1 RgyRefngpapLketLAaalvrlagw....kpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear...aelk. 78 
                 RgyR  +g apLke+LAaa + +agw     +g  l+DPmCG Gt+l+Eaal++a+iap l re++++             l++ea+++a    a+ + 
  VIMSS59498 165 RGYRLQQGAAPLKENLAAAVLIRAGWpkiaAEGGALADPMCGVGTFLVEAALMAADIAPNLKRERWGFsswlghvpalwrkLHEEAQQRAAaglARPPl 263
                 9*************************5554579********************************************9998777777777755433336 PP

                 .EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHH CS
     UPF0020  79 .lygsDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalek 174
                  ++g + d+r++q a +N e+agv+d ++++q + a ++   ++g+ +++++npPYGerlg++ +l  LY++++++l + + g  +++ ++++  +l k
  VIMSS59498 264 wIRGYEADPRLIQPACNNIERAGVADWVKIYQGELATFEprPDKGQTGLVICNPPYGERLGDEASLLYLYQNLGERLRQSCIG--WSAGVFTGAPELGK 360
                 7*************************************9966777**********************************9999..************** PP

                 CC---ESEEEEEEETTEEEE CS
     UPF0020 175 aleeralrkvkeknvklgll 194
                  ++ r+ +++   n+ l + 
  VIMSS59498 361 RMGIRSHKQYAFWNGALACK 380
                 *********99999999886 PP

  == domain 2  score: 8.2 bits;  conditional E-value: 9.7e-05
                 HH--EEEEES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG.--STTS---EEEE--- CS
     UPF0020  75 aelklygsDldrrvvqgareNaekagvgdliefsqadaak.LrlkegevdvivtnpP 130
                    +   +Dl + +++ ar+N++  g +d+  ++  d+ + Lr+++g++++i  +pP
  VIMSS59498 586 GARSTTSVDLSKTYLDWARRNLSLNGFSDKQRLVHGDVMEwLREDDGQYELIFIDPP 642
                 45558899*****************************9874779999*********9 PP



Or compare VIMSS59498 to CDD or PaperBLAST