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Align VIMSS6201 to PF01170 (UPF0020)

VIMSS6201 has 332 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence  Description
    ------- ------ -----    ------- ------ -----   ---- --  --------  -----------
    3.6e-33  101.0   0.0    3.8e-32   97.7   0.0    2.0  1  VIMSS6201  


Domain annotation for each sequence (and alignments):
>> VIMSS6201  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   97.7   0.0   3.8e-32   3.8e-32       3     183 ..     159     310 ..     157     324 .. 0.90

  Alignments for each domain:
  == domain 1  score: 97.7 bits;  conditional E-value: 3.8e-32
                SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT-G CS
    UPF0020   3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekagvg 102
                +R+f  p +L +++A+a+v+l++++  + +lDP+ G+G++lIEa+l+g +++                          g+D+ + +v+ga+ N+e++gv+
  VIMSS6201 159 RRPFSRPIALPPRIARAMVNLTRAT--REILDPFMGTGGMLIEAGLMGLKVY--------------------------GIDIREDMVEGAKINLEYYGVK 230
                8********************9865..67*********************99..........................********************** PP

                GGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC---ESEE CS
    UPF0020 103 dliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekaleeralrk 183
                d + +++ da+k++   + + +++i+t+pPYG +++   + ++LY+  l+++ +vl+g  rl+++++++ +  +++e   ++ 
  VIMSS6201 231 DYV-VKVGDATKIKeaFPGKTFEAIATDPPYGTSTTLPMDRDELYKRALESMYSVLEG--RLAIAFPSDFDALDVAETIGFKV 310
                *98.5777******7645569************************************9..********999998888766555 PP



Or compare VIMSS6201 to CDD or PaperBLAST