VIMSS819650 has 380 amino acids
Query: UPF0020 [M=197]
Accession: PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.5e-65 204.4 0.0 1.4e-64 203.5 0.0 1.4 2 VIMSS819650
Domain annotation for each sequence (and alignments):
>> VIMSS819650
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ? -3.7 0.0 0.45 0.45 63 82 .. 94 113 .. 83 121 .. 0.59
2 ! 203.5 0.0 1.4e-64 1.4e-64 1 194 [. 165 368 .. 165 370 .. 0.99
Alignments for each domain:
== domain 1 score: -3.7 bits; conditional E-value: 0.45
UPF0020 63 yelkaeaeeearaelklygs 82
+++k ea++++ + l+++g+
VIMSS819650 94 FKVKIEAKRANVKSLQFAGL 113
33555555555555555554 PP
== domain 2 score: 203.5 bits; conditional E-value: 1.4e-64
UPF0020 1 RgyRvfngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvye............lkaeaeeear.aelklygsDld 85
RgyR ++g+apL+e+LAa+l+ ag++ ++p++DP+CGsGti+IEaa+++a +apg++r+f +e l+++ae+++r ++++++gsD+
VIMSS819650 165 RGYRLDTGEAPLRENLAAGLLLSAGYDGTQPFQDPFCGSGTIAIEAAWIAAGRAPGMMRRFGFEklqnfdktlwadLRRRAEAQTRpVRAPIAGSDNG 262
9*************************************************************************************9999******** PP
UPF0020 86 rrvvqgareNaekagvgdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekaleeralrk 183
rr+vq+a +Na++ag +d+++fs+a a+++r ++ge++++v+npPYG rl++ +al++LY++++++lk++++g + v ++++++++ k+++ rk
VIMSS819650 263 RRIVQTALDNAHNAGADDIVSFSVAGAQSVR-PNGENGIMVSNPPYGVRLEEVRALQALYPQLGTWLKKHYAG--WRVGMFTGDREMPKFMRLLPKRK 357
*******************************.****************************************9..*********************** PP
UPF0020 184 vkeknvklgll 194
++++n++++++
VIMSS819650 358 IPLYNGNIDCR 368
*********97 PP
Or compare VIMSS819650 to CDD or PaperBLAST