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Align VIMSS92501 to PF01170 (UPF0020)

VIMSS92501 has 702 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.1e-74  235.6   0.0    6.2e-70  221.0   0.0    2.2  2  VIMSS92501  


Domain annotation for each sequence (and alignments):
>> VIMSS92501  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  221.0   0.0   6.2e-70   6.2e-70       1     196 [.     162     375 ..     162     376 .. 0.97
   2 !   12.4   0.0   5.1e-06   5.1e-06      79     169 ..     564     657 ..     532     668 .. 0.83

  Alignments for each domain:
  == domain 1  score: 221.0 bits;  conditional E-value: 6.2e-70
                 -SSS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SS.............HHHHHHHHHH...HH--..EEE CS
     UPF0020   1 RgyRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvle.............lkaeaeeear...aelk..lyg 81 
                 RgyR+++g ap+ketLAaa+v+++gw+pg+pllDPmCGsGt+lIEaa+l++++apgl+r ++++             +kaea+++ar   ae++  +yg
  VIMSS92501 162 RGYRDRAGIAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFsgwaqhdeaiwqeVKAEAQTRARkglAEYSshFYG 260
                 9****************************************************************************9999999999988666677*** PP

                 EES-HHHHHHHHHHHHHTT-GGGEEEEE--GGG--..STTS---EEEE----------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESSHHHHHCC-- CS
     UPF0020  82 sDldrrvvqgareNaekagvgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltsenkalekalee 178
                 sD+d+rv+q+ar+Na+ ag+g+li+f+++d+a+L+  l+++ ++++++npPYGerl+s++al +L+s ++r +k+++ g  ++++l+s++ +l ++l+ 
  VIMSS92501 261 SDSDARVIQRARTNARLAGIGELITFEVKDVAQLTnpLPKEPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGG--WNLSLFSASPDLLSCLQL 357
                 ***********************************999999************************************99..****************** PP

                 -ESEEEEEEETTEEEEEE CS
     UPF0020 179 ralrkvkeknvklglllk 196
                 ra +++k+kn++l++++k
  VIMSS92501 358 RADKQYKAKNGPLDCVQK 375
                 ***************997 PP

  == domain 2  score: 12.4 bits;  conditional E-value: 5.1e-06
                 EEEEES-HHHHHHHHHHHHHTT-GGGEE.EEE--G.GG--STTS---EEEE---...-------HHHHHHHHHHHHHHHHHH-TT..-EEEEEESS CS
     UPF0020  79 lygsDldrrvvqgareNaekagvgdlie.fsqada.akLrlkegevdvivtnpP...YGerlgskkalekLYseflrelkrvlrgggrlvlltsen 169
                    +D+ r +++ a++N++  g++++ + + qad  a Lr++++++d+i  +pP     +r++++ ++++ + ++++ lkr lr gg   +++s+n
  VIMSS92501 564 TTTVDMSRTYLEWAERNLRLNGLTGRAHrLIQADClAWLREANEQFDLIFIDPPtfsNSKRMEDAFDVQRDHLALMKDLKRLLRAGG--TIMFSNN 657
                 5679******************9988653677776256889999**********6444689999999*****************944..4444444 PP



Or compare VIMSS92501 to CDD or PaperBLAST