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Align VIMSS939190 to PF01170 (UPF0020)

VIMSS939190 has 331 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    8.6e-31   93.3   0.0      7e-30   90.3   0.0    2.0  1  VIMSS939190  


Domain annotation for each sequence (and alignments):
>> VIMSS939190  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   90.3   0.0     7e-30     7e-30       3     171 ..     156     298 ..     154     324 .. 0.91

  Alignments for each domain:
  == domain 1  score: 90.3 bits;  conditional E-value: 7e-30
                  SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHHHTT CS
      UPF0020   3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNaekag 100
                   R+f+ p +L +++++alv+l+++  ++ +lDP+ G G+ilIEa+llg +++                          g+D+ +++v+ga++N++++g
  VIMSS939190 156 HRPFFRPISLHPRVSRALVNLTKA--TREILDPFMGAGGILIEAGLLGLRVY--------------------------GVDIRPEMVEGAETNLKHYG 225
                  79*******************965..678*********************99..........................******************** PP

                  -GGGEEEEE--GGG--..STTS---EEEE----------HHHH.HHHHHHHHHHHHHH-TT..-EEEEEESSHH CS
      UPF0020 101 vgdliefsqadaakLr..lkegevdvivtnpPYGerlgskkal.ekLYseflrelkrvlrgggrlvlltsenka 171
                  v d  +++  da+ L+   +++++++++t+pPYG + + ++++ ++LY++ lr++ +vl+ ggrl+++++++ +
  VIMSS939190 226 VRDY-TLKLGDATRLEdlFPDKKFEAVATDPPYGTAATLAGRKrDELYRKALRSIYNVLEDGGRLAIAFPTDFN 298
                  *996.688899****9987888**************999988879************************98755 PP



Or compare VIMSS939190 to CDD or PaperBLAST