PaperBLAST – Find papers about a protein or its homologs

 

Align WP_023976062.1 to PF01170 (UPF0020)

WP_023976062.1 has 470 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      1e-10   27.7   0.0    2.3e-10   26.6   0.0    1.6  1  WP_023976062.1  


Domain annotation for each sequence (and alignments):
>> WP_023976062.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   26.6   0.0   2.3e-10   2.3e-10      19     145 ..     153     273 ..     149     311 .. 0.83

  Alignments for each domain:
  == domain 1  score: 26.6 bits;  conditional E-value: 2.3e-10
         UPF0020  19 alvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagvgdliefsqadaa 113
                     ++v+l + k+ge+  DP  G+ ++ I a    ++          y+ +++  +e++++  + g +l ++  + a  Na    +++ i + +    
  WP_023976062.1 153 VMVKLIDPKPGEKCNDPAAGTFGFMIGADHYMKEKT------DNYFDLDTDLQEFQRTKAFSGCELVHETHRLALMNAMLHDIEGNIILGDTLTN 241
                     7*************************9977666666......456677777777778888*******************************9999 PP

         UPF0020 114 kLrlkegevdvivtnpPYGerlgskkal.ekLY 145
                     + + k +++dv+++npP+G + g ++a  ++L+
  WP_023976062.1 242 EGK-KMKDIDVVLSNPPFGTKKGGERATrDDLT 273
                     888.5558************9999998866665 PP



Or compare WP_023976062.1 to CDD or PaperBLAST