PaperBLAST – Find papers about a protein or its homologs

 

Align XP_011863749.1 to PF01170 (UPF0020)

XP_011863749.1 has 474 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.22
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
      3e-39  120.9   0.0    8.4e-39  119.4   0.0    1.7  1  XP_011863749.1  


Domain annotation for each sequence (and alignments):
>> XP_011863749.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  119.4   0.0   8.4e-39   8.4e-39       7     178 ..     264     411 ..     259     428 .. 0.95

  Alignments for each domain:
  == domain 1  score: 119.4 bits;  conditional E-value: 8.4e-39
         UPF0020   7 ngpapLketLAaalvrlagwkdgepllDPmCGsGtilIEaallganiapgllrefvyelkaeaeeearaelklygsDldrrvvqgareNaekagv 101
                     +gp++L++t+ + l++la+ k g+ ++DPmCG+G+i+IEa l   + +                        + + D+d+r+v+++++N  + +v
  XP_011863749.1 264 FGPTTLRSTICYNLLKLANPKLGDIIVDPMCGGGSIPIEATLAYPHLY------------------------VLCGDNDSRAVDRSKSNMDASTV 334
                     579*********************************************........................89********************* PP

         UPF0020 102 gdliefsqadaakLrlkegevdvivtnpPYGerlgskkalekLYseflrelkrvlrgggrlvlltaenkalekalee 178
                     g +i+++q+ a kL+ k++ vd++vt++P+G+r g+k  ++ +Y++fl el r+++++gr+vllt ++ ++++al  
  XP_011863749.1 335 GCKIDLVQWTASKLPFKDSFVDIVVTDMPFGKRSGNKSYNKIFYKQFLLELGRMVKSNGRIVLLTYDRCNFKDALMA 411
                     ***************88889****************************************************99865 PP



Or compare XP_011863749.1 to CDD or PaperBLAST