PaperBLAST – Find papers about a protein or its homologs

 

Align XP_012048035.1 to PF01170 (UPF0020)

XP_012048035.1 has 475 amino acids

Query:       UPF0020  [M=197]
Accession:   PF01170.18
Description: Putative RNA methylase family UPF0020
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.3e-12   31.7   0.0      1e-10   27.8   0.0    2.3  1  XP_012048035.1  


Domain annotation for each sequence (and alignments):
>> XP_012048035.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   27.8   0.0     1e-10     1e-10       3     139 ..     188     310 ..     187     315 .. 0.82

  Alignments for each domain:
  == domain 1  score: 27.8 bits;  conditional E-value: 1e-10
                     SS-SS---SS-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTT--TTTT----SSHHHHHHHHHHHH--EEEEES-HHHHHHHHHHHH CS
         UPF0020   3 yRefngpapLketLAaalvrlagwkpgepllDPmCGsGtilIEaallganiapgllrefvlelkaeaeeearaelklygsDldrrvvqgareNae 97 
                      R + g++++ +++   + + a   pg+ ++DP+ G+G++l   a+ ga+++   +                +  +++g  + + +  g  + ae
  XP_012048035.1 188 TRAYYGNTSMEAQMGFLMANQALPVPGKLIYDPFVGTGSMLYAVAQFGAYVMGSDI----------------DGRQIRGKKKGKGIKPGILRAAE 266
                     588999**********************************************3222................44456666666666666666778 PP

                     HTT-GGG.EEEEE--GGG--.STTS---EEEE----------HH CS
         UPF0020  98 kagvgdl.iefsqadaakLr.lkegevdvivtnpPYGerlgskk 139
                     +++++d+  +f+  d++  + ++ g +d+i+t+pPYG r g+k+
  XP_012048035.1 267 QYRLQDKfLDFYIFDVTRGPiRRGGWIDAIITDPPYGVRAGAKR 310
                     88887752689999999877557779***************997 PP



Or compare XP_012048035.1 to CDD or PaperBLAST