PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS102984 to PF01205 (UPF0029)

VIMSS102984 has 213 amino acids

Query:       UPF0029  [M=105]
Accession:   PF01205.19
Description: Uncharacterized protein family UPF0029
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.4e-38  115.6   0.0    9.2e-38  115.1   0.0    1.2  1  VIMSS102984  


Domain annotation for each sequence (and alignments):
>> VIMSS102984  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  115.1   0.0   9.2e-38   9.2e-38       2     105 .]      20     124 ..      19     124 .. 0.96

  Alignments for each domain:
  == domain 1  score: 115.1 bits;  conditional E-value: 9.2e-38
                  TEEEEEEEEE-SSHHHHHHHHHHH--..TTSSEEEEEE....EE....TTEE-TTSST..SHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHH.HH CS
      UPF0029   2 kSrFiavlaaveseeevkaileelkkenkkathniyAyrlrqkvekvnedsdddgEpa..AGkkllelLekeklenvlvvvtRwfGGikLGpgrl.ra 96 
                  kSrFia++ +v++e+e+ka+++++kke+k+athn++Ay +  + +   ++++ddgEp   AG ++l++L+k +++n++vvvtR+fGGikLG g+l ra
  VIMSS102984  20 KSRFIAHIKPVQNEDEAKAFIAAIKKEHKDATHNCSAYTIGPEMN--IQKANDDGEPTgtAGVPMLDILKKLDVHNACVVVTRYFGGIKLGGGGLiRA 115
                  9*************************************8888874..899************************************************ PP

                  HHHHHHHHH CS
      UPF0029  97 iseaareaL 105
                  +s a+r+++
  VIMSS102984 116 YSGAVRDVI 124
                  *****9986 PP



Or compare VIMSS102984 to CDD or PaperBLAST