PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS123140 to PF01205 (UPF0029)

VIMSS123140 has 194 amino acids

Query:       UPF0029  [M=105]
Accession:   PF01205.19
Description: Uncharacterized protein family UPF0029
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.6e-30   91.9   0.0    2.9e-30   91.0   0.0    1.4  2  VIMSS123140  


Domain annotation for each sequence (and alignments):
>> VIMSS123140  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   91.0   0.0   2.9e-30   2.9e-30       1     104 [.      15     114 ..      15     115 .. 0.94
   2 ?   -3.3   0.0      0.67      0.67      61      81 ..     161     181 ..     153     188 .. 0.68

  Alignments for each domain:
  == domain 1  score: 91.0 bits;  conditional E-value: 2.9e-30
                  TTEEEEEEEEE-SSHHHHHHHHHHH--..TTSSEEEEEE....EE....TTEE-TTSST..SHHHHHHHHHHTTB-SEEEEEEEE--SS--HHHHH.H CS
      UPF0029   1 kkSrFiavlaaveseeevkaileelkkenkkathniyAyrlrqkvekvnedsdddgEpa..AGkkllelLekeklenvlvvvtRwfGGikLGpgrl.r 95 
                  kkSrF+a + ++e+e  +k++++   ++++ a+hn++A+r  q        ++ddgEp+  AGk++l ++  + l+ v+vvvtRwfGG++LG+g+l r
  VIMSS123140  15 KKSRFLAIAGPIEDELSAKTFIA--ARSDPAANHNCWAWRAGQSY-----RFSDDGEPSgtAGKPILAAIDGQSLDRVAVVVTRWFGGVLLGSGGLvR 105
                  8**********************..777899********777777.....6*********************************************** PP

                  HHHHHHHHH CS
      UPF0029  96 aiseaarea 104
                  a+  +a  +
  VIMSS123140 106 AYGGTAALC 114
                  **9998766 PP

  == domain 2  score: -3.3 bits;  conditional E-value: 0.67
                  HHHHHHHHHHTTB-SEEEEEE CS
      UPF0029  61 GkkllelLekeklenvlvvvt 81 
                  G  l   +++  +++vl +v+
  VIMSS123140 161 GAVLSAEIRQDAVDDVLTLVS 181
                  556666667777777777665 PP



Or compare VIMSS123140 to CDD or PaperBLAST