PaperBLAST – Find papers about a protein or its homologs

 

Align A7MF62 to PF01458 (SUFBD)

A7MF62 has 496 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
      1e-76  243.5   0.0    1.3e-76  243.2   0.0    1.1  1  A7MF62    


Domain annotation for each sequence (and alignments):
>> A7MF62  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  243.2   0.0   1.3e-76   1.3e-76       2     218 .]     235     467 ..     234     467 .. 0.96

  Alignments for each domain:
  == domain 1  score: 243.2 bits;  conditional E-value: 1.3e-76
   SUFBD   2 qfertlivveegaevtiieeyagc............gvveivvgknAklkyvevqnw......senvlnlatkra.eegadakvelvevslggkltrkepsve 85 
             qfert++v++eg++v++i   +gc            +vve++++k+A++ky++vqnw       +++ln++tkra  eg+++k+++++ ++g+++t+k+psv+
  A7MF62 235 QFERTILVADEGSYVSYI---EGCsapvrdsyqlhaAVVEVIIHKDAEVKYSTVQNWfpgdnnTGGILNFVTKRAlCEGENSKMSWTQSETGSAITWKYPSVI 334
             89****************...555555555555555*************************9888**********87799*********************** PP

   SUFBD  86 lkgegaeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgAt 188
             l+g+++  e+++v+l++g+q++dtgtk++h g+nt+s+i+skg++++ks++++rG++k+ + a++++++++c+++l+++++ a+t P++e++++ ++++H+At
  A7MF62 335 LRGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTKSTIISKGISAGKSQNSYRGLVKIMPTATNARNFTQCDSMLIGPDCGAHTFPYVECRNNSAQLEHEAT 437
             ******************************************************************************************************* PP

   SUFBD 189 vgkideeqlfYLmsRGlseeeArrlivrgf 218
             +++i e+qlfY+ +RG+see+A ++iv+gf
  A7MF62 438 TSRIGEDQLFYCLQRGISEEDAISMIVNGF 467
             *****************************9 PP



Or compare A7MF62 to CDD or PaperBLAST