PaperBLAST – Find papers about a protein or its homologs

 

Align NP_564404.1 to PF01458 (UPF0051)

NP_564404.1 has 475 amino acids

Query:       UPF0051  [M=218]
Accession:   PF01458.17
Description: Uncharacterized protein family (UPF0051)
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    4.6e-64  202.2   0.1    5.9e-64  201.8   0.1    1.1  1  NP_564404.1  


Domain annotation for each sequence (and alignments):
>> NP_564404.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  201.8   0.1   5.9e-64   5.9e-64       2     218 .]     224     450 ..     223     450 .. 0.98

  Alignments for each domain:
  == domain 1  score: 201.8 bits;  conditional E-value: 5.9e-64
      UPF0051   2 qfertlivveegaevtiieey.........agcgvveifvgenAklkyvkvqnwsedavnlstkraeegrdaklelttvslggkltrkepsvelkgeg 90 
                  +++r+ + veeg e+ i+ee+         +++ v+e++v++nAklk++ +q++s  + +++ + +++++++++el++vs+ggkl r++++v++ g++
  NP_564404.1 224 SNPRVFVLVEEGGEIGIVEEFvgkdeegfyWTNPVLEVVVQKNAKLKHSYLQKESMASAHIKWTFVRQEAESEYELVEVSTGGKLGRHNVHVQQLGPD 321
                  58999****************999999999889***************************************************************** PP

      UPF0051  91 aeaelnglylakgkqhldtrtkvdhngpntssrilskgvlkdea.ravfrgkikvrkgaqktdahqenrnLllsdkaradtiPeleidaddvkasHgA 187
                  + +el++  ++ ++q ld+++k+++++p++ sr+l+k++++ ++ +avf+g+++v++ aq+t+a q  r+Lll+++a+++ +P+l+i addvk+sHgA
  NP_564404.1 322 TLTELTTFHMCVNEQTLDLHSKIILDHPRGASRQLHKCIVAHSSgQAVFDGNVRVNRFAQQTNAGQLTRSLLLKPRATVNIKPNLQIIADDVKCSHGA 419
                  ***************************************999666***************************************************** PP

      UPF0051 188 tvGkideeqlfYLmsRGlseeeArrlivrgf 218
                  +++ ++e+qlfY+++RG++ e+Arr ++ +f
  NP_564404.1 420 AISDLEEDQLFYFQARGIDLETARRALISSF 450
                  ****************************998 PP



Or compare NP_564404.1 to CDD or PaperBLAST