PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS103062 to PF01458 (SUFBD)

VIMSS103062 has 435 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.1e-64  204.3   1.8    1.7e-64  203.6   1.8    1.3  1  VIMSS103062  


Domain annotation for each sequence (and alignments):
>> VIMSS103062  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  203.6   1.8   1.7e-64   1.7e-64       3     218 .]     184     408 ..     182     408 .. 0.95

  Alignments for each domain:
  == domain 1  score: 203.6 bits;  conditional E-value: 1.7e-64
        SUFBD   3 fertlivveegaevtiieey.......agc...gvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkgeg 90 
                  +++++iv ee aevt++e+y         +    ++e+++g+n++++y +v++ +++ +    +r+  +ada++++  + ++++  + + +++l g++
  VIMSS103062 184 YNHVIIVTEESAEVTYVENYlsnasgeG-NqlnIISEVIAGANSNITYGSVDYMDKGFTGHIIRRGITEADASINWALGLMNEGSQIIDNTTNLFGDR 280
                  68******************77776640.2666*********************998887777778779***************************** PP

        SUFBD  91 aeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgAt 188
                  ++++l++v++++g+q++++++k+   g++t + il +gv+k+++ +vf+G  ++++g +k+ a+qe+r+L+ls++ar d++P+l+i++ddv+++H+A+
  VIMSS103062 281 STSSLKSVVVGTGEQKINLTSKIVQYGKETDGYILKHGVMKEHASSVFNGIGYIKHGGTKSIANQESRVLMLSEHARGDANPILLIDEDDVQAGHAAS 378
                  ************************************************************************************************** PP

        SUFBD 189 vgkideeqlfYLmsRGlseeeArrlivrgf 218
                  vg++d++ql+YLmsRG+s+ eA+rl+++gf
  VIMSS103062 379 VGRVDPDQLYYLMSRGISQREAERLVIHGF 408
                  *****************************9 PP



Or compare VIMSS103062 to CDD or PaperBLAST