PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS372529 to PF01458 (SUFBD)

VIMSS372529 has 384 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.8e-42  131.6   0.9    3.1e-42  130.8   0.9    1.4  1  VIMSS372529  


Domain annotation for each sequence (and alignments):
>> VIMSS372529  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  130.8   0.9   3.1e-42   3.1e-42       5     218 .]     142     357 ..     113     357 .. 0.92

  Alignments for each domain:
  == domain 1  score: 130.8 bits;  conditional E-value: 3.1e-42
        SUFBD   5 rtlivveegaevtiieey.........agcgvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkgegaea 93 
                  ++ i+v+ega v ii  y         ++ +v+ + +g++++++++ +  +s+ ++n++++++e  ++  ++ + + +++k++  e++++l+ ++a++
  VIMSS372529 142 NIEINVKEGAIVDII--YlaeneipdsLQSSVISLKIGRDSQVNFTLIA-KSTYIYNYSKVYCE--GE--LNATLFATKSKMAHIEYTTILE-KDARS 231
                  56799**********..5545555666556***************9998.44667777766554..55..8999****************97.9**** PP

        SUFBD  94 elngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvk.csHgAtvg 190
                   ++   ++++++++d++++v+h+g ++ se + kg+++d++ +v+rG+  v++ a ++++++  r+ +l+++a++   P+le+++  v  ++H+A+v+
  VIMSS372529 232 VFSAKSIGRDNDKIDMKVNVQHEGLRSVSEGNLKGIATDNALVVVRGDASVNQIAFDSSTSIIGRAYILGKDAKSIVAPMLEVKTGRVLmAKHSASVS 329
                  ****************************************************************************************99******** PP

        SUFBD 191 kideeqlfYLmsRGlseeeArrlivrgf 218
                  ++ ++ +fYL+ RGls++eA++ ++rgf
  VIMSS372529 330 RVPDDLIFYLENRGLSRKEAESFLIRGF 357
                  ***************************9 PP



Or compare VIMSS372529 to CDD or PaperBLAST