PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS5796428 to PF01458 (SUFBD)

VIMSS5796428 has 423 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.7e-74  234.6   4.6    7.1e-74  234.3   4.6    1.1  1  VIMSS5796428  


Domain annotation for each sequence (and alignments):
>> VIMSS5796428  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  234.3   4.6   7.1e-74   7.1e-74       3     218 .]     170     393 ..     168     393 .. 0.98

  Alignments for each domain:
  == domain 1  score: 234.3 bits;  conditional E-value: 7.1e-74
         SUFBD   3 fertlivveegaevtiieey........agcgvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsvelkgega 91 
                   + r+++ + egae+t+ie+y        ++ + ++++v++nA+l+++++  ++++++++a++   ++ da+  ++++ lg+++ r++ s++l+ge+a
  VIMSS5796428 170 HYRHHLALAEGAEATVIEHYvsltaakhFTGARLTMNVADNAQLHHIKLAFENASSYHFAHNDLLLATDASAFSHSFLLGAAVLRHHSSSQLNGENA 266
                   6789999*************99988887777****************************************************************** PP

         SUFBD  92 eaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleieaddvkcsHgAt 188
                   +++ln++++  +++ +dt+t ++hn+ +++s++ +k++++dk+ravf+G+i v+++a ktd++++++nLll++ a++dtkP+lei+addvkcsHgAt
  VIMSS5796428 267 TLRLNSLAMPVKNEVCDTRTWLEHNKGYCNSRQSHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNNLLLGKLAEVDTKPQLEIYADDVKCSHGAT 363
                   ************************************************************************************************* PP

         SUFBD 189 vgkideeqlfYLmsRGlseeeArrlivrgf 218
                   +g+id+eq+fYL+sRG+ ++eAr++i+++f
  VIMSS5796428 364 IGRIDDEQMFYLQSRGIRQQEARHMILYAF 393
                   ****************************98 PP



Or compare VIMSS5796428 to CDD or PaperBLAST