PaperBLAST – Find papers about a protein or its homologs

 

Align WP_005684882.1 to PF01458 (SUFBD)

WP_005684882.1 has 478 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    3.4e-79  251.7   0.6    4.4e-79  251.3   0.6    1.1  1  WP_005684882.1  


Domain annotation for each sequence (and alignments):
>> WP_005684882.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  251.3   0.6   4.4e-79   4.4e-79       2     218 .]     224     449 ..     223     449 .. 0.96

  Alignments for each domain:
  == domain 1  score: 251.3 bits;  conditional E-value: 4.4e-79
           SUFBD   2 qfertlivveegaevtiieeyagc............gvveivvgknAklkyvevqnwsenvlnlatkraeegadakvelvevslggkltrkepsv 84 
                     qfertli+ve+ga+v+++   +gc            +vve++v+++A ++y+++qnws+nv+ l+tkra+  ++a++e+v+++lg+k t+k+psv
  WP_005684882.1 224 QFERTLIIVEPGAHVNYV---EGCtapnyssdslhaAVVEVFVKNDAYCRYTTIQNWSKNVFSLETKRAQALDNATMEWVDGNLGSKTTMKYPSV 315
                     99****************...555555555556666*********************************************************** PP

           SUFBD  85 elkgegaeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPeleiead 179
                     +l+g+ga+ ++ ++++a+++  +d+g++++hn+pntss i+sk+++kd++ + +rG++++ k+a ++  h+ec+++l+++k+++dt+P+ ei++ 
  WP_005684882.1 316 YLDGKGAHGTMLSIAVAGEGVDQDNGARMIHNAPNTSSSIVSKSIAKDGGAVDYRGTVRFTKKADNAFCHVECDTILMDEKSSSDTIPYNEIHNS 410
                     *********************************************************************************************** PP

           SUFBD 180 dvkcsHgAtvgkideeqlfYLmsRGlseeeArrlivrgf 218
                     +v ++H+A+v+k++eeql+YLmsRG+se++A+++i+ gf
  WP_005684882.1 411 TVSMEHEAKVSKVSEEQLYYLMSRGISEAKATEMIIMGF 449
                     **************************************9 PP



Or compare WP_005684882.1 to CDD or PaperBLAST