PaperBLAST – Find papers about a protein or its homologs

 

Align WP_013239338.1 to PF01458 (SUFBD)

WP_013239338.1 has 306 amino acids

Query:       SUFBD  [M=218]
Accession:   PF01458.21
Description: SUF system FeS cluster assembly, SufBD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.7e-51  161.1   0.8    2.1e-51  160.8   0.8    1.1  1  WP_013239338.1  


Domain annotation for each sequence (and alignments):
>> WP_013239338.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  160.8   0.8   2.1e-51   2.1e-51       3     218 .]      79     304 ..      77     304 .. 0.95

  Alignments for each domain:
  == domain 1  score: 160.8 bits;  conditional E-value: 2.1e-51
           SUFBD   3 fertlivveegaevtiieeyagc.............gvveivvgknAklkyvevqnw.....senvlnlatkra.eegadakvelvevslggklt 78 
                      +++ ++++eg++v i+   agc             gv+e++v+k+A++kyve +       +e++ln++t+   eeg+ a++elv+++  ++  
  WP_013239338.1  79 VVYNTFEIGEGSDVLIV---AGCgihnpgekksqhdGVHEFFVRKGARIKYVERHFGegsgnGERILNPKTIIEvEEGGFAELELVQIKGVSSTK 170
                     57899************...8888888888889999*******************9999998999****9996669999**********999988 PP

           SUFBD  79 rkepsvelkgegaeaelngvylakgkqhldtgtkvdhngpntsseilskgvlkdksravfrGkikvekgaqktdahqecrnLllsdkaradtkPe 173
                     r+ ++++l+ ++a+a +++ +l+ ++q ++++++v++ g+++s++i+s++v++d+s++ f+ ++    g +++++h++c+++++++ a+++++P+
  WP_013239338.1 171 RD-TEIKLH-KNARAVVSERLLTYKNQDAESKINVEMVGRDSSARIISRSVARDESKQLFHLNM---SGYERCRGHIQCDSIIMDE-ATVQSIPK 259
                     88.99**98.******************************************************...9*****************6.******** PP

           SUFBD 174 leieaddvkcsHgAtvgkideeqlfYLmsRGlseeeArrlivrgf 218
                     + +++ d ++ H+A++gki+ +ql++Lms Glse+eA++ i++gf
  WP_013239338.1 260 ISAFHSDSQLIHEAAIGKIASDQLIKLMSLGLSEKEAEDTILKGF 304
                     ********************************************9 PP



Or compare WP_013239338.1 to CDD or PaperBLAST