PaperBLAST – Find papers about a protein or its homologs

 

Align Q8EDE1 to PF01595 (CNNM)

Q8EDE1 has 439 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    6.1e-52  162.0   6.0    8.3e-52  161.6   6.0    1.1  1  Q8EDE1    


Domain annotation for each sequence (and alignments):
>> Q8EDE1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  161.6   6.0   8.3e-52   8.3e-52       1     181 []       4     196 ..       4     196 .. 0.98

  Alignments for each domain:
  == domain 1  score: 161.6 bits;  conditional E-value: 8.3e-52
    CNNM   1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae............galavviatv 91 
             +i++ l++l+++f+++E+A+v+++k+rl +la++g++ ak++lkl e+p+++Lst++ig+t + il ++++++++ae l+             + ++ v++++
  Q8EDE1   4 FILIGLIVLNGLFAMSEIAIVTARKSRLTALAHAGSSTAKAALKLAEDPTQFLSTVQIGITSIGILNGIFGESILAEPLSLwlqtfglspdvtNIFSTVLVVI 106
             57899**************************************************************************88***********88888899999 PP

    CNNM  92 ivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseeeGvieeee 181
             ivt++ +v+GE++Pk+++   ae+ia ++a+p+ +l i ++P+vw+l+ ++ +++rl+G++++ ++ vt+e+++++++e+ + Gvie++e
  Q8EDE1 107 IVTYVSIVIGELVPKRIGQVSAESIACIMAKPMVFLAIATKPFVWMLSGSTHALMRLMGFSHRLDDNVTQEDIQAMLQEGSSAGVIEHNE 196
             99*************************************************************************************987 PP



Or compare Q8EDE1 to CDD or PaperBLAST