PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS1868525 to PF01595 (CNNM)

VIMSS1868525 has 463 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    4.4e-48  149.4   2.7    6.3e-48  148.9   2.7    1.2  1  VIMSS1868525  


Domain annotation for each sequence (and alignments):
>> VIMSS1868525  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  148.9   2.7   6.3e-48   6.3e-48       2     179 ..      12     208 ..      10     210 .. 0.95

  Alignments for each domain:
  == domain 1  score: 148.9 bits;  conditional E-value: 6.3e-48
          CNNM   2 iallllllsaffsaaEtAlvslsklrleelaekgn...kgakrllkllenperlLstlligntlvnillsalatalfaellae.............. 81 
                   ++l+ +l++aff+a+E+Alv+ +++ lee+ ++g+   ++ +r+l++++n++++Lst+++g++l+ i+l+++++++++ ll                
  VIMSS1868525  12 VMLVTFLFAAFFVACEFALVQSRPSALEEMIDNGTgrkAKVERALRMVHNLNEYLSTTQVGVSLAGIILGWIGETTVEFLLVDlfglthlslpngsl 108
                   4566679***************************985555566*********************************9999999999*********** PP

          CNNM  82 galavviatvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv..kkeeepavteeelrslveeseeeGv 176
                   +a+++++ ++i+t+l +v++Ei+Pk++ + ++ k+ ++v+ pl++++il+yP+vwlln++a++i++++G+   +e ++a+++ e+ sl +++ + G+
  VIMSS1868525 109 HAVGAILGVIILTYLEVVLTEIVPKNISIDYPIKTLMLVVTPLHYFHILFYPFVWLLNVSATGIVKMMGMkpADEGNEAFSQAEILSLSKNAVTTGD 205
                   ********************************************************************************************99999 PP

          CNNM 177 iee 179
                   +e+
  VIMSS1868525 206 MEQ 208
                   986 PP



Or compare VIMSS1868525 to CDD or PaperBLAST