PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS19901 to PF01595 (DUF21)

VIMSS19901 has 449 amino acids

Query:       DUF21  [M=176]
Accession:   PF01595.20
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    4.7e-53  165.7   5.6      7e-53  165.1   5.6    1.2  1  VIMSS19901  


Domain annotation for each sequence (and alignments):
>> VIMSS19901  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  165.1   5.6     7e-53     7e-53       2     174 ..      20     212 ..      19     214 .. 0.98

  Alignments for each domain:
  == domain 1  score: 165.1 bits;  conditional E-value: 7e-53
       DUF21   2 iivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae..............galav 86 
                 +++ll+ll+aff+ +E+Alv+++++rleel++ g+++ak +lk+ ++++ +Ls++++g+tl++++l++++++++++lla+              ++++v
  VIMSS19901  20 VAFLLVLLNAFFVLSEFALVKVRKTRLEELVKIGNSNAKLALKMSQRLDTYLSATQLGITLSSLALGWVGEPAIAKLLAAlfesmdlrenpifiHSMSV 118
                 678999********************************************************************************************* PP

       DUF21  87 viatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil......esesepavseeelkklveeseeegviee 174
                 via++ +t+l++v+gEi+Pksla++++ek  l+ a+pl+v+ v++yP+v+l++ ++ ++l       +e++ ++seeelk +v es +eg+i++
  VIMSS19901 119 VIAFLSITFLHVVLGEIVPKSLAIAKSEKATLFAARPLHVFWVVFYPVVRLFDVIAHFFLkkmginPKEHDGTHSEEELKIIVGESLREGIIDS 212
                 ******************************************************************99************************97 PP



Or compare VIMSS19901 to CDD or PaperBLAST