VIMSS244046 has 341 amino acids
Query: CNNM [M=181] Accession: PF01595.24 Description: Cyclin M transmembrane N-terminal domain Scores for complete sequences (score includes all domains): --- full sequence --- --- best 1 domain --- -#dom- E-value score bias E-value score bias exp N Sequence Description ------- ------ ----- ------- ------ ----- ---- -- -------- ----------- 2.4e-45 140.5 4.6 3.5e-45 140.0 4.6 1.2 1 VIMSS244046 Domain annotation for each sequence (and alignments): >> VIMSS244046 # score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc --- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ---- 1 ! 140.0 4.6 3.5e-45 3.5e-45 5 178 .. 11 198 .. 7 201 .. 0.97 Alignments for each domain: == domain 1 score: 140.0 bits; conditional E-value: 3.5e-45 CNNM 5 lllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae............galavviat 90 l ll +aff++aE+A++s++++++e +a++g+k+a+ l+ l++ +++++t ++g+t+ +++l+a+a++++a+l+++ +++a++ia+ VIMSS244046 11 LTLLTNAFFVGAEFAMISVRRSQIEPRAKTGDKRARMTLWGLQHISQMMATAQLGITVSSLVLGAVAEPAIAHLMEPvfeavhmphalvHPVAFAIAL 108 66789********************************************************************************************* PP CNNM 91 vivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv..kkeeepavteeelrslveeseeeGvie 178 ++ t+l++++GE++Pk++al+ + ++al++ ppl l + l+P+v+ +n++an +l+ll+v k+e e ++t+++l +v + e G + VIMSS244046 109 TLATYLHMLIGEMIPKNIALAAPATTALLLGPPLVALTRALKPVVFGINAFANTLLKLLRVepKDEVEAVFTDDQLARMVVDASEAGLLT 198 ***********************************************************************************9999875 PP
Or compare VIMSS244046 to CDD or PaperBLAST