PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS257586 to PF01595 (CNNM)

VIMSS257586 has 446 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
      3e-56  176.0   5.3    4.3e-56  175.5   5.3    1.2  1  VIMSS257586  


Domain annotation for each sequence (and alignments):
>> VIMSS257586  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  175.5   5.3   4.3e-56   4.3e-56       1     181 []       5     207 ..       5     207 .. 0.98

  Alignments for each domain:
  == domain 1  score: 175.5 bits;  conditional E-value: 4.3e-56
         CNNM   1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae................. 81 
                  li+++l++l++ff+++E++l++ +k+rl+++a ++ k+a+r+l l e pe++Lst++ig+tl+ il+++++++++ e++a                  
  VIMSS257586   5 LIVIALIVLNGFFAMSEMSLMTSRKSRLKQMAGSS-KRAARALALAESPENFLSTVQIGITLIGILTGVFGGEAIGEAIASwlqgvfpalagtfelvg 101
                  6889*****************************97.79999**************************************99***************** PP

         CNNM  82 ......galavviatvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveesee 173
                          +++++a++++t+l+l+fGE++Pk+lal+n+e ia +va+p+ +l ++ +P vw+l ++++l+lr+lG++k+e+  vteee+r+lv+es+e
  VIMSS257586 102 kprpysVVIGSTLAVALITFLTLIFGELVPKRLALRNSEDIAGVVAVPMAWLAKIAAPGVWVLARSTRLVLRMLGMGKDESASVTEEEIRMLVAESHE 199
                  ******999*******************************************************************99******************** PP

         CNNM 174 eGvieeee 181
                   Gvi++ e
  VIMSS257586 200 AGVIDAHE 207
                  ****9865 PP



Or compare VIMSS257586 to CDD or PaperBLAST