PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS260 to PF01595 (DUF21)

VIMSS260 has 414 amino acids

Query:       DUF21  [M=176]
Accession:   PF01595.20
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence Description
    ------- ------ -----    ------- ------ -----   ---- --  -------- -----------
    3.1e-28   84.8   2.2    7.1e-28   83.6   1.8    1.7  2  VIMSS260  


Domain annotation for each sequence (and alignments):
>> VIMSS260  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   83.6   1.8   7.1e-28   7.1e-28       1     176 []       8     182 ..       8     182 .. 0.89
   2 ?   -1.6   0.0      0.11      0.11      27      51 ..     250     274 ..     243     279 .. 0.80

  Alignments for each domain:
  == domain 1  score: 83.6 bits;  conditional E-value: 7.1e-28
     DUF21   1 liivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellaegalavviatviv.tllilvf 100
               +++ +++l+s+f+s + +Al+sl ++ + + +++++++ +++ +l++ p++lL tl++    +ni+   ++++l+++       a+++ tv v   l+lv+
  VIMSS260   8 ILTAIFVLCSGFVSLSHIALFSLPSSLIAHYSHSKNRQLRQIANLMAYPNHLLMTLVFFDIGINIGVQNCIATLVGD------SASLLLTVGVpLALTLVL 102
               57788899*************************************************99999999988877666444......45567777777******* PP

     DUF21 101 gEilPkslalkyaekialalapplrvlmvllyPlv.wl...lskllnlilesesepavseeelkklveeseeegvieeee 176
               gEi+Pk +a+ y+ +ia+++ p++   ++ ++P+  w    ++ +++++l ++++++++++elk+++++ ++ gv+++ee
  VIMSS260 103 GEIVPKVIAIPYNARIAKIVTPIIFASTKSFRPIFdWAisgINFIVQKMLARQESDFIQPQELKEVLRSCKDFGVVNHEE 182
               *********************************99644334666666666**************************9998 PP

  == domain 2  score: -1.6 bits;  conditional E-value: 0.11
     DUF21  27 rleelaekgkkkakrllkllknper 51 
               +l  l +++ ++a+ ll+ll++p+ 
  VIMSS260 250 KLLLLYKEKLQSAEELLPLLRKPHY 274
               566677888899999******9985 PP



Or compare VIMSS260 to CDD or PaperBLAST