VIMSS260 has 414 amino acids
Query: CNNM [M=181]
Accession: PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-28 85.9 2.1 2e-28 85.3 1.6 1.5 2 VIMSS260
Domain annotation for each sequence (and alignments):
>> VIMSS260
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 85.3 1.6 2e-28 2e-28 1 181 [] 8 182 .. 8 182 .. 0.88
2 ? -3.1 0.0 0.27 0.27 28 50 .. 251 273 .. 244 275 .. 0.79
Alignments for each domain:
== domain 1 score: 85.3 bits; conditional E-value: 2e-28
CNNM 1 liallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatviv.tllilvf 100
+++++++l+s+f+s + +Al+sl ++ + + ++++n++ +++ +l++ p++lL tl++ +ni+ ++++l+ + a+++ tv v l+lv+
VIMSS260 8 ILTAIFVLCSGFVSLSHIALFSLPSSLIAHYSHSKNRQLRQIANLMAYPNHLLMTLVFFDIGINIGVQNCIATLVGD------SASLLLTVGVpLALTLVL 102
5788999**************************************************99999999877766555444......44567777777******* PP
CNNM 101 GEilPktlalknaekialavapplrvlsillyPlv.wllnllanlilrllGv.kkeeepavteeelrslveeseeeGvieeee 181
GEi+Pk +a+ ++ +ia +v p++ + ++P+ w ++ + ++ + + ++e+++++++el++++++ + Gv+++ee
VIMSS260 103 GEIVPKVIAIPYNARIAKIVTPIIFASTKSFRPIFdWAISGINFIVQK---MlARQESDFIQPQELKEVLRSCKDFGVVNHEE 182
*********************************996665555444444...3489************************9997 PP
== domain 2 score: -3.1 bits; conditional E-value: 0.27
CNNM 28 leelaekgnkgakrllkllenpe 50
l l +++ ++a+ ll+ll++p+
VIMSS260 251 LLLLYKEKLQSAEELLPLLRKPH 273
55577888899999999999997 PP
Or compare VIMSS260 to CDD or PaperBLAST