VIMSS261 has 404 amino acids
Query: CNNM [M=181]
Accession: PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
6.8e-35 106.4 0.2 1.3e-34 105.5 0.2 1.4 1 VIMSS261
Domain annotation for each sequence (and alignments):
>> VIMSS261
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 105.5 0.2 1.3e-34 1.3e-34 4 177 .. 14 184 .. 11 188 .. 0.94
Alignments for each domain:
== domain 1 score: 105.5 bits; conditional E-value: 1.3e-34
CNNM 4 llllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvivtllilvfGEil 104
ll++++ +ffs++E+A +s +++rl+ k+nk+a+ + l+++p rl t+++g++++ + +++ + + +ll+ ++ a + +l+++f+E++
VIMSS261 14 LLCIFVQGFFSMMEMACISFNRVRLQYYLTKSNKKASYINFLVRRPYRLFGTVMLGVNIA-LQIGSESSRTCYKLLG---ISPEYAPATQIILVVIFAELI 110
7999******************************************************98.5677788888899995...67777778889********** PP
CNNM 105 PktlalknaekialavapplrvlsillyPlvwllnllanlilrllGv.kkeeepavteeelrslveeseeeGvi 177
P ++ +k +ekial+ ap+l++ ++l+yPl+ +++ ++n i +l + ++ +++++++el++ +e ++ee ++
VIMSS261 111 PLAISRKIPEKIALKGAPILYFAHYLFYPLIQCVGGITNMIYFILNIkEETLHSTLSRDELQKTLETHHEEHDF 184
**********************************************************************9665 PP
Or compare VIMSS261 to CDD or PaperBLAST