PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS264947 to PF01595 (DUF21)

VIMSS264947 has 451 amino acids

Query:       DUF21  [M=176]
Accession:   PF01595.20
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-52  163.1   4.4    4.4e-52  162.5   4.4    1.2  1  VIMSS264947  


Domain annotation for each sequence (and alignments):
>> VIMSS264947  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.5   4.4   4.4e-52   4.4e-52       2     176 .]       8     201 ..       7     201 .. 0.97

  Alignments for each domain:
  == domain 1  score: 162.5 bits;  conditional E-value: 4.4e-52
        DUF21   2 iivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae............galavv 87 
                  i+++l++l aff++aE+A+v+++++r++ l ++g+ +a  ++ ++ n++++Ls++++g+t++ +++++++++++ +++ +            + +av+
  VIMSS264947   8 IVIVLIALTAFFVAAEFAIVKVRSSRIDYLIAEGNNRATSVKTVITNLDEYLSACQLGITVTALGIGWFGKPALKQMFDTlfvnlnistqlaDIFAVI 105
                  679999*******************************************************************99999999999*******9889999 PP

        DUF21  88 iatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil.......esesepavseeelkklveeseeegvieeee 176
                  ++++++t+l++v+gE++Pk++a+++ae+++l++a pl ++++  +P++wll+ ++++i+        + +++++seeel+ lv+es+++g+i+++e
  VIMSS264947 106 LVFLFITFLHVVIGELAPKTFAIQKAEQVSLFVAKPLTFFYRMAFPFIWLLNGSARIITkllglkpPKGHDEVHSEEELRLLVSESYKNGEINQSE 201
                  999999************************************************************99************************9887 PP



Or compare VIMSS264947 to CDD or PaperBLAST