PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS313266 to PF01595 (DUF21)

VIMSS313266 has 449 amino acids

Query:       DUF21  [M=176]
Accession:   PF01595.20
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.2e-54  169.9   0.5      3e-54  169.5   0.5    1.2  1  VIMSS313266  


Domain annotation for each sequence (and alignments):
>> VIMSS313266  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  169.5   0.5     3e-54     3e-54       2     176 .]      11     203 ..       9     203 .. 0.98

  Alignments for each domain:
  == domain 1  score: 169.5 bits;  conditional E-value: 3e-54
        DUF21   2 iivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae............galavv 87 
                  i++ll++l  +f+g+E+Alv+++++r+e+l+++g+k+ak+++k+++n++ +Ls++++g+t+++++l++l++++f++++++            +++++v
  VIMSS313266  11 IFFLLIALTTVFVGSEFALVKVRSTRIEQLVDEGNKSAKIVKKMIDNLDYYLSACQLGITVTSLGLGWLGEPTFEKMMHPlfellhlpspltTTISFV 108
                  778888************************************************************************99************99**** PP

        DUF21  88 iatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil......esesepavseeelkklveeseeegvieeee 176
                  +++++vt+l++v+gE++Pks+a+++ e++al++++pl ++  +++Pl+wl++ ++++i+       +++++a+seee+k +++ s++ g+i+++e
  VIMSS313266 109 VSFIVVTYLHVVLGELAPKSFAIQHTEQLALLYSRPLFYFGNFMKPLIWLMNGSSRVIVrmfgfdPDAQTDAMSEEEIKIIINNSYNGGEINQTE 203
                  *****************************************************************99************************9987 PP



Or compare VIMSS313266 to CDD or PaperBLAST