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Align VIMSS46122 to PF01595 (DUF21)

VIMSS46122 has 452 amino acids

Query:       DUF21  [M=176]
Accession:   PF01595.20
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.2e-48  150.4   7.2    3.3e-48  149.9   7.2    1.2  1  VIMSS46122  


Domain annotation for each sequence (and alignments):
>> VIMSS46122  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  149.9   7.2   3.3e-48   3.3e-48       2     174 ..      28     219 ..      27     221 .. 0.98

  Alignments for each domain:
  == domain 1  score: 149.9 bits;  conditional E-value: 3.3e-48
       DUF21   2 iivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae............galavvi 88 
                 ++++l++l++ff+ +E+++v+++r++lee+++++k++ak++l+++++++ +Ls++++g+tl++++l+++++++++++l+             +++a++i
  VIMSS46122  28 VALALVFLNGFFVLSEFSIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIAKMLEIplinlgfstviiHTMAFII 126
                 67899*************************************************************************99******************* PP

       DUF21  89 atvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil.......esesepavseeelkklveeseeegviee 174
                 a+ i+tll++v+gE++Pks+a++ a+k +l++a+pl+++ +l+ P++++++ l+ + l        +ese ++seee+k + +es++ gv++e
  VIMSS46122 127 AFSIITLLHVVLGELVPKSIAIAVADKAVLFIARPLHWFWMLFLPCIKIFDFLAAISLklfgikpAKESELTHSEEEIKIIASESQKGGVLDE 219
                 ******************************************************9999*******99************************98 PP



Or compare VIMSS46122 to CDD or PaperBLAST