VIMSS52883 has 352 amino acids
Query: CNNM [M=181]
Accession: PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
3.7e-31 94.3 2.2 5.7e-31 93.6 2.2 1.3 1 VIMSS52883
Domain annotation for each sequence (and alignments):
>> VIMSS52883
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 93.6 2.2 5.7e-31 5.7e-31 5 180 .. 10 177 .. 6 178 .. 0.94
Alignments for each domain:
== domain 1 score: 93.6 bits; conditional E-value: 5.7e-31
CNNM 5 lllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvivtllilvfGEi 103
+ + +s ++s +E+ l+s++++ l +l+++g++ a+rl l+++ +r L+++l +nt++ ++ +a a+a +a ++ g+ ++ ++ +++tl ilv++Ei
VIMSS52883 10 VAIGVSFICSVLEAVLLSITPSYLAQLRQQGHPAANRLAGLKADIDRPLASILTLNTIAHTIGAATAGAQAAVVF--GSQWLGLFSAVLTLGILVLSEI 106
67899**********************************************************************..7899999999************ PP
CNNM 104 lPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseeeGvieee 180
+Pkt+++ + ++a + +lr+ ++ l+P+vw+ +++++ + ++ e ++e+ ++ +++e+G++ e
VIMSS52883 107 VPKTIGATYWRELAPQASLVLRWMVWALTPFVWFSEQITKRLA------RKVEAPKLRDEISAMAMLANENGEFAEG 177
*******************************************......55566666899************99775 PP
Or compare VIMSS52883 to CDD or PaperBLAST