PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS7472011 to PF01595 (DUF21)

VIMSS7472011 has 444 amino acids

Query:       DUF21  [M=176]
Accession:   PF01595.20
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
      1e-50  158.0   2.3    1.5e-50  157.5   2.3    1.2  1  VIMSS7472011  


Domain annotation for each sequence (and alignments):
>> VIMSS7472011  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  157.5   2.3   1.5e-50   1.5e-50       2     175 ..      15     200 ..      13     203 .. 0.95

  Alignments for each domain:
  == domain 1  score: 157.5 bits;  conditional E-value: 1.5e-50
         DUF21   2 iivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae........galavviat 90 
                   ++++l+ll+affs++E+Alvsl+r+r+e++a++g+kk +rll++l++p+++Lst+++g+t++++l++a ++a ++++++         ++++ +i++
  VIMSS7472011  15 VLFILTLLNAFFSASEMALVSLNRSRVEQKAADGDKKYARLLRVLEEPNHFLSTIQVGITFISLLSGASLSASLGKVISGwlggsataQTAGGIISL 111
                   667888**************************************************************9999999999889999**99888889999 PP

         DUF21  91 vivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil......esesepavseeelkklveeseeegvieee 175
                   +++t++ +v+gE+ Pk++a++ ++k+a ++ap++  l ++++P+vwlls+++nl+        ++ +++++++e++++++ se+    ++e
  VIMSS7472011 112 IFLTYVSIVLGELYPKRIAMNLKDKLAIVSAPIIIGLGKVVSPFVWLLSASTNLLSritpmtFDDADEQMTRDEIEYMLSNSEATL--DAE 200
                   999*******************************************************************************9884..444 PP



Or compare VIMSS7472011 to CDD or PaperBLAST