PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS7609517 to PF01595 (DUF21)

VIMSS7609517 has 432 amino acids

Query:       DUF21  [M=176]
Accession:   PF01595.20
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence     Description
    ------- ------ -----    ------- ------ -----   ---- --  --------     -----------
    5.2e-51  159.0   3.1    5.2e-51  159.0   3.1    1.5  2  VIMSS7609517  


Domain annotation for each sequence (and alignments):
>> VIMSS7609517  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  159.0   3.1   5.2e-51   5.2e-51       1     174 [.       4     193 ..       4     195 .. 0.96
   2 ?   -3.9   0.0      0.52      0.52     154     166 ..     227     239 ..     225     240 .. 0.84

  Alignments for each domain:
  == domain 1  score: 159.0 bits;  conditional E-value: 5.2e-51
         DUF21   1 liivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae............gala 85 
                   +ii++l+ll+++f+++E+A++s++++ l + +++g+k+ak++l l +np+++Lst++ig+tl+ il++++ ++++++ +++            + +a
  VIMSS7609517   4 IIIIVLILLNGIFAMSEIAVISARKSSLMKDSKEGNKGAKTALALADNPDKFLSTIQIGITLIGILTGIYSGDTVAKEVSNllvkinvplnyaSLIA 100
                   7899**********************************************************************99999889999*****9998888 PP

         DUF21  86 vviatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil....esesepavseeelkklveeseeegviee 174
                    v+++++vt+l+l+fgE++Pk++++  +e+ia+++a p+ +l ++ +P+vw+ls ++ l+      ++++++v+eee+k+++ee+++ g+++e
  VIMSS7609517 101 QVLVVALVTYLTLIFGELVPKRIGMVMPERIAKVVAAPMTILAKIGAPFVWILSNSALLVSrvlgIKDDKSPVTEEEIKSMIEEGRQGGEVKE 193
                   89999999*************************************************9999****99**********************9876 PP

  == domain 2  score: -3.9 bits;  conditional E-value: 0.52
         DUF21 154 vseeelkklvees 166
                   +s +e+kk+v+ +
  VIMSS7609517 227 MSNDEIKKIVSKH 239
                   7899*****9976 PP



Or compare VIMSS7609517 to CDD or PaperBLAST