PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS946883 to PF01595 (CNNM)

VIMSS946883 has 428 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    5.7e-51  158.8   6.6    9.5e-51  158.1   6.6    1.3  1  VIMSS946883  


Domain annotation for each sequence (and alignments):
>> VIMSS946883  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.1   6.6   9.5e-51   9.5e-51       2     177 ..      11     184 ..      10     188 .. 0.97

  Alignments for each domain:
  == domain 1  score: 158.1 bits;  conditional E-value: 9.5e-51
         CNNM   2 iallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvivtllilv 99 
                  i+++ll+ls +fs+aE++l+s+s++r+++l+ +gnk+ak + +ll++ e ++ t+l+gnt++ni  s+l+ta+f++l+  g+ +v+++t+++t+ il+
  VIMSS946883  11 IIFVLLILSFLFSGAEIGLTSVSRSRVNKLKLDGNKRAKIIDHLLNKKELTIGTILLGNTIINITCSVLFTAIFINLF--GNESVFLSTIVMTFCILL 106
                  6799999***********************************************************************..5679************** PP

         CNNM 100 fGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseeeGvi 177
                  f E+lPkt+a++n+ek+ +++a+++ +++++++Pl+  +  + n+il+l G++k++e +   + +r +++++++eG++
  VIMSS946883 107 FCEVLPKTYAMQNPEKFTSFSAYFVLFFVKIFSPLTLGIQFIVNFILKLCGFHKNREAISAADAMRNMIALHRSEGTM 184
                  ****************************************************999999999***************98 PP



Or compare VIMSS946883 to CDD or PaperBLAST