PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS96665 to PF01595 (CNNM)

VIMSS96665 has 447 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    2.5e-47  146.9   3.6    4.9e-47  146.0   3.6    1.4  1  VIMSS96665  


Domain annotation for each sequence (and alignments):
>> VIMSS96665  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  146.0   3.6   4.9e-47   4.9e-47       2     181 .]       7     197 ..       5     197 .. 0.97

  Alignments for each domain:
  == domain 1  score: 146.0 bits;  conditional E-value: 4.9e-47
        CNNM   2 iallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellae...........galavvia 89 
                 ++l l+++saffs++E++l + +k++l+ la++gn +a+r+l++ enp  + ++++ig + v il +++++a+f+ +++            ++l+++++
  VIMSS96665   7 VILCLIAVSAFFSMSEISLAASRKIKLKLLADEGNINAQRVLNMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFHSlfsrymsaelsEQLSFILS 105
                 556677************************************************************************99******************* PP

        CNNM  90 tvivtllilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseeeGvieeee 181
                 + +vt ++++f++++Pk++++  +e++al+++ p+r++ ++++Plvw++n lan+i+r+++    +++ +t++++ ++ve+++  Gv+ ++e
  VIMSS96665 106 FSLVTGMFILFADLTPKRIGMIAPEAVALRIINPMRFCLYVCTPLVWFFNGLANIIFRIFKLPMVRKDDITSDDIYAVVEAGALAGVLRKQE 197
                 ****************************************************************************************9987 PP



Or compare VIMSS96665 to CDD or PaperBLAST