PaperBLAST – Find papers about a protein or its homologs

 

Align WP_002295395.1 to PF01595 (DUF21)

WP_002295395.1 has 458 amino acids

Query:       DUF21  [M=176]
Accession:   PF01595.20
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    6.8e-51  158.6   2.6      1e-50  158.0   2.6    1.2  1  WP_002295395.1  


Domain annotation for each sequence (and alignments):
>> WP_002295395.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  158.0   2.6     1e-50     1e-50       1     175 [.      15     200 ..      15     201 .. 0.96

  Alignments for each domain:
  == domain 1  score: 158.0 bits;  conditional E-value: 1e-50
           DUF21   1 liivlllllsaffsgaEtAlvslsrlrleelaekgkkkakrllkllknperlLstlligntlvnillsalatalfvellae........galavv 87 
                     l++++l+l++af++++E+A+vs++++r+e++a++g+ k+++llk+l+np+++Lst+++g+tlvnil++a ++ +++e la+        +++a +
  WP_002295395.1  15 LLLIVLTLINAFLAASEIAVVSINKNRIEQKADEGDVKSQKLLKILQNPNNFLSTIQVGITLVNILSGASLANTLSERLAPvlgggtaaKNIANI 109
                     5778999**************************************************************999999999999********99**** PP

           DUF21  88 iatvivtllilvfgEilPkslalkyaekialalapplrvlmvllyPlvwllskllnlil......esesepavseeelkklveeseeegvieee 175
                     i+++i+t++ +vfgE+ Pk++al+++e++a+++++++r++ v+ +P+vwlls+++ l+        +++++ ++++e+++++e     gv+++e
  WP_002295395.1 110 IVLAILTYVSIVFGELYPKRIALNKSEEVAKFTSGLIRLIGVVAKPFVWLLSASTSLLAritpmtFDDEDSKMTRDEMRYMLENE---GVLNNE 200
                     **********************************************************************************875...666655 PP



Or compare WP_002295395.1 to CDD or PaperBLAST