PaperBLAST – Find papers about a protein or its homologs

 

Align WP_128789995.1 to PF01595 (CNNM)

WP_128789995.1 has 428 amino acids

Query:       CNNM  [M=181]
Accession:   PF01595.24
Description: Cyclin M transmembrane N-terminal domain
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.9e-35  108.2   2.6    2.8e-35  107.7   2.6    1.2  1  WP_128789995.1  


Domain annotation for each sequence (and alignments):
>> WP_128789995.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  107.7   2.6   2.8e-35   2.8e-35       2     181 .]       8     185 ..       7     185 .. 0.97

  Alignments for each domain:
  == domain 1  score: 107.7 bits;  conditional E-value: 2.8e-35
            CNNM   2 iallllllsaffsaaEtAlvslsklrleelaekgnkgakrllkllenperlLstlligntlvnillsalatalfaellaegalavviatvivtll 96 
                      a++l++++ + ++aE++l ++s++r ee +++g++g ++l ++ ++p+r+L++ l+ +  ++++++al+t +  e+++ ++ a+++a+++++l+
  WP_128789995.1   8 GAIALVVVAWLAACAEAGLARVSSFRAEEAVKSGRRGGEKLAQIAADPTRYLNVALLVRVACEMAAAALVTYACLEAFSATWQALLVAIAVMVLV 102
                     67999**************************************************************************9*************** PP

            CNNM  97 ilvfGEilPktlalknaekialavapplrvlsillyPlvwllnllanlilrllGvkkeeepavteeelrslveeseeeGvieeee 181
                       v   + P+t+++++++ +a + a++l  l +++ P+  ll l+ n+++   G + +++p+++e elr+lv+++e+e  ie ee
  WP_128789995.1 103 SYVAVGVSPRTIGRQHPLNTATVAAYVLVPLARVMGPIPSLLILIGNALT--PGKGFRRGPFASEAELRALVDLAEKESLIEDEE 185
                     **************************************************..45599*********************9998886 PP



Or compare WP_128789995.1 to CDD or PaperBLAST