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Align CharProtDB::CH_125933 to PF01930 (Cas_Cas4)

CharProtDB::CH_125933 has 1398 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.17
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence              Description
    ------- ------ -----    ------- ------ -----   ---- --  --------              -----------
    4.2e-10   26.1   0.0    1.1e-09   24.7   0.0    1.8  2  CharProtDB::CH_125933  


Domain annotation for each sequence (and alignments):
>> CharProtDB::CH_125933  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 ?   -4.1   0.0      0.85      0.85       5      43 ..     445     483 ..     443     503 .. 0.67
   2 !   24.7   0.0   1.1e-09   1.1e-09      67     161 ..     593     690 ..     537     691 .. 0.83

  Alignments for each domain:
  == domain 1  score: -4.1 bits;  conditional E-value: 0.85
               Cas_Cas4   5 iqyyliCkrklwlish.eitleensetvelGkllheesye 43 
                            + + + C rk+ +  + +i     + +v  G +lh+  ++
  CharProtDB::CH_125933 445 VASSFPCLRKAVISDRvGIYGPPTKAMVT-GNILHDFFQH 483
                            56667788998888886666666666666.9999985443 PP

  == domain 2  score: 24.7 bits;  conditional E-value: 1.1e-09
               Cas_Cas4  67 lvvvEvKkskkkeeaa.klQllyYlllLe.kkgveikeGvleypkekkree.velteelreelekaikeieeiissekppkvkkkkiC 151
                            + + E+K ++   + +  +Q l Y ll+  + g++ +++ l y+++   ++ v  + +lr  + +  + +++ ++++ p+  +++kiC
  CharProtDB::CH_125933 593 TLPLELKTGRYVDNIShFAQSLLYTLLISdRYGINTNQALLCYLENSTIKNlVASNSQLRGLIMTRNSLAQHNFRRSLPEMISNRKIC 680
                            4459999999986655499**********9***************99998868888889999999999999999999*********** PP

               Cas_Cas4 152 kkCayaelCl 161
                            ++C++ + Cl
  CharProtDB::CH_125933 681 DHCSLVSECL 690
                            *******997 PP



Or compare CharProtDB::CH_125933 to CDD or PaperBLAST