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Align NP_001184943.1 to PF01930 (Cas_Cas4)

NP_001184943.1 has 1315 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.17
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    2.7e-11   30.0   0.0      7e-11   28.7   0.0    1.7  1  NP_001184943.1  


Domain annotation for each sequence (and alignments):
>> NP_001184943.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   28.7   0.0     7e-11     7e-11      16     161 ..     488     660 ..     482     661 .. 0.70

  Alignments for each domain:
  == domain 1  score: 28.7 bits;  conditional E-value: 7e-11
        Cas_Cas4  16 wlisheitleensetvelGkllheesyerek....kevelse...............sikiDvvekekeklvvvEvKkskkk....eeaaklQll 87 
                     w+ + +++ +++ ++v++G ++ +++ + ++    +e+++                  ++ D+ +  +ek+++ E+K++k+     + ++ +Q+ 
  NP_001184943.1 488 WIEHFRYSKDSEVSKVDFGSTIGKKAVKVSEvidiEEMSW-ApkyglkgmidasvrvIVESDMNT-VNEKIMPLEFKSGKAPsgqsSIEHSAQVI 580
                     7777788888888888888888886666643344545554.134677333333333344444444.6788889******998666577899**** PP

        Cas_Cas4  88 yYlllLe.kkgveikeGvleypkekkreevelteelreel....ekaikeieeiisse.kppkvkkkkiCkkCayaelCl 161
                      Y ll+  +   +i++G l+y+++ +++ +++++ +   l    ++ +++i   ++++  pp   + +iC++C   ++C 
  NP_001184943.1 581 LYTLLMSeRYLKHIDNGLLYYLQSDQTQGISVQRSDLVGLiirrNELANDILVASTTQqLPPMLRNPNICRNCRHLDVCT 660
                     *******555567899***************9998865442222455566665555552777788889***********7 PP



Or compare NP_001184943.1 to CDD or PaperBLAST