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Align SwissProt::Q1CW50 to PF01930 (Cas_Cas4)

SwissProt::Q1CW50 has 568 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.17
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence          Description
    ------- ------ -----    ------- ------ -----   ---- --  --------          -----------
    5.2e-24   71.3   0.0    7.9e-24   70.8   0.0    1.3  1  SwissProt::Q1CW50  


Domain annotation for each sequence (and alignments):
>> SwissProt::Q1CW50  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   70.8   0.0   7.9e-24   7.9e-24       4     162 .]      36     209 ..      33     209 .. 0.89

  Alignments for each domain:
  == domain 1  score: 70.8 bits;  conditional E-value: 7.9e-24
           Cas_Cas4   4 kiqyyliCkrklwlish.eitleensetvelGkllheesyer.ekkevel.se....sikiDvvekekeklvvvEvKkskkk.......eea 81 
                        +++ +++C+r ++l ++ e+++++    v +G+ lh + +e+ e+ e+el se    ++++D v++++++lvv+E+K++++        ++ 
  SwissProt::Q1CW50  36 ALHALAYCERLFYLEEVeELRVADA--AVFAGRRLHVQLQEEgEHVELELaSEalglHGRVDAVKTREGTLVVYEHKRGRHApggdapeAWP 125
                        57889***********966666666..9999*****988888566888887779999************************99999998666 PP

           Cas_Cas4  82 a.klQllyYlllLekk..gveikeGvleypkekkreevelteelreelekaikeieeiisse.kppkvkkkkiCkkCayaelCli 162
                        + +lQ  +Y+ll+e++  g  ++   ++y+++  +++  l+++lr ++  a+++++ + +s  +pp+++++++C kC++a++Cl+
  SwissProt::Q1CW50 126 SdRLQAGAYALLVEERfpGAPVE-CRVRYHQTDTTVRFPLDAALRGAVVAAVARARLLRASReRPPVTQEERKCAKCSLAPVCLP 209
                        66************654588888.99******************************99876659*******************86 PP



Or compare SwissProt::Q1CW50 to CDD or PaperBLAST