PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS380343 to PF01930 (Cas_Cas4)

VIMSS380343 has 559 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.17
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.4e-26   79.7   0.0    1.9e-26   79.2   0.0    1.2  1  VIMSS380343  


Domain annotation for each sequence (and alignments):
>> VIMSS380343  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   79.2   0.0   1.9e-26   1.9e-26       4     162 .]      15     198 ..      12     198 .. 0.90

  Alignments for each domain:
  == domain 1  score: 79.2 bits;  conditional E-value: 1.9e-26
     Cas_Cas4   4 kiqyyliCkrklwlisheitleensetvelGkllhe...........esyerek.....kevel.se....sikiDvvekekeklvvvEvKkskkk.. 78 
                  +++ +++C+r ++l+ ++ ++++n+ tv+ G + h            e  ++e+     ++v+l se    ++kiD+ve e+  + +v++K++k+   
  VIMSS380343  15 MLNEHVYCPRLAYLMWVQGEFSHNEFTVD-GVIRHRrvdagggvlpsE--TQEDsrihaRSVSLsSErlgiTAKIDLVEGEGAYVSPVDYKRGKRPhv 109
                  7899*************************.***999********9653..333234667*****6669*999*******99999999********999 PP

     Cas_Cas4  79 ....eeaaklQllyYlllLekkgveikeGvleypkekkreevelteelreelekaikeieeiisse.kppkvkkkkiCkkCayaelCli 162
                       e  ++Ql+++ llL+++g   + G+l+++ +++r+ v +++el  ++  ai+e+ +   s   pp+ +++++C +C++  +Cl+
  VIMSS380343 110 aggaYEPERVQLCAQGLLLREHGFASDGGALYFVASRERVPVAFDDELIGRTLAAIDEMGRTALSGtMPPPLEDSPKCPRCSLVGICLP 198
                  99977778***************************************************877665538899999*************85 PP



Or compare VIMSS380343 to CDD or PaperBLAST