PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS753493 to PF01930 (Cas_Cas4)

VIMSS753493 has 197 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.17
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    6.8e-15   41.7   2.2    1.4e-14   40.7   2.2    1.5  1  VIMSS753493  


Domain annotation for each sequence (and alignments):
>> VIMSS753493  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   40.7   2.2   1.4e-14   1.4e-14       3     160 ..      11     193 ..       9     195 .. 0.80

  Alignments for each domain:
  == domain 1  score: 40.7 bits;  conditional E-value: 1.4e-14
     Cas_Cas4   3 tkiqyyliCkrklwlish.eitleensetvelGkllhe...........esyerek......kevelse...........sikiDvvekekeklvvvE 71 
                   +i++y +C+r ++++++ +++++     v+ G+  +            +     k      ++v   +            + +D + +++ +++++E
  VIMSS753493  11 NMIRQYCFCPRIVYYHMVvGLKVAYP-GWVQYGEEYQHkqqvldkrrtlS-----KfkpiseQAVLR-QntmlehpsypfYGICDGIIEDELEIIPIE 101
                  589************99879999888.89999*87766566665554441.....132333222222.135566677799999**9999999****** PP

     Cas_Cas4  72 vKkskkkeeaa.klQllyYlllLe.kkgveikeGvleypkekkreevelteelreelekaikeieeiissekpp.kvkkkkiCkkCayaelC 160
                  +K+  +k     k+Ql++Y +l e      +++G++   ++ k + ++++e+ + ++ ++ ++i++i+ +e+ p ++++   C +C++ + C
  VIMSS753493 102 LKSFASKISLGqKMQLTAYGMLSElIFEKPCTRGYIITGEKAKAKLIKIDEKSKFKVIEICAKIKKIFGTETLPySTANGLQCIQCEFLNHC 193
                  ***988766555*********999988999999***********************************99976615566669******9999 PP



Or compare VIMSS753493 to CDD or PaperBLAST