PaperBLAST – Find papers about a protein or its homologs

 

Align WP_009886025.1 to PF01930 (Cas_Cas4)

WP_009886025.1 has 889 amino acids

Query:       Cas_Cas4  [M=162]
Accession:   PF01930.17
Description: Domain of unknown function DUF83
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.8e-12   33.9   4.1      5e-12   32.4   4.1    1.8  1  WP_009886025.1  


Domain annotation for each sequence (and alignments):
>> WP_009886025.1  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   32.4   4.1     5e-12     5e-12      48     161 ..     768     885 ..     734     886 .. 0.79

  Alignments for each domain:
  == domain 1  score: 32.4 bits;  conditional E-value: 5e-12
        Cas_Cas4  48 evelse...sikiDvvekekeklvvvEvKkskkk..eeaaklQllyYlllLekkgveikeGvleypkekkreevelteelreelekaikeieeii 137
                     e+ +++    +kiDv+ ++++++++ ++K s+    +e+a +Q+l Y+  L+++g ++++     +k+++++e e++++  +e +k ++ + + +
  WP_009886025.1 768 EFPVENaiiDGKIDVIIDKHGNAEIRDYKTSEDVvtKEEADMQILLYAEGLRSQGYHVTKVSTISIKTNEKNEQEIDDNIISENKKRTEGLINSL 862
                     34443367789*********************98657788*******************888888889999999999988777777766666555 PP

        Cas_Cas4 138 ssekppkvkkkkiCkkCayaelCl 161
                     ++ +  k kk+k+C++C+y e+C 
  WP_009886025.1 863 KNGE-FKGKKSKFCDRCEYLEICK 885
                     5544.4678999***********5 PP



Or compare WP_009886025.1 to CDD or PaperBLAST