PaperBLAST – Find papers about a protein or its homologs

 

Align BRENDA::Q8PVT6 to PF01933 (UPF0052)

BRENDA::Q8PVT6 has 303 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence       Description
    ------- ------ -----    ------- ------ -----   ---- --  --------       -----------
    1.3e-52  164.9   0.0    1.5e-52  164.7   0.0    1.0  1  BRENDA::Q8PVT6  


Domain annotation for each sequence (and alignments):
>> BRENDA::Q8PVT6  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  164.7   0.0   1.5e-52   1.5e-52       2     259 ..       2     267 ..       1     296 [. 0.88

  Alignments for each domain:
  == domain 1  score: 164.7 bits;  conditional E-value: 1.5e-52
                     EEEE-CHHHHHHHHHHCCSS..CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH...--S-C..........HHHHHCH-B-SS..... CS
         UPF0052   2 vvlgGGtGlskllrglkevt..aeltavvtvaDdggssGelrrelgllaigDirnvlval...idder..........lleeLfqyRfkg..... 76 
                     ++++GGtG++kll+glke+   +elt+vv++a+d + sG        l+ +D+++vl+     id++r          ++e++ ++ +++     
  BRENDA::Q8PVT6   2 IIFSGGTGTPKLLDGLKEILpeEELTVVVNTAEDLWVSG-------NLISPDLDTVLYLFsdqIDRKRwwgiendtfgTYERMKELGIEEglklg 89 
                     68******************999****************.......99************55555555999988888888888888666699999 PP

                     SSSSTT-BHHHHHHHHHHHHHS.-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-EEE.STTTGGGG-S...-EEE.EEEESTT----HH CS
         UPF0052  77 dgdlaghslgnllLaalaeltg.sleeaiealskilkvrgrvlPatddpvelsaeledGeeit.geskisearklkapikr.vflepegaeaape 168
                     d+d a+h+++  +++      g sl++++ +ls+++++++++lP++ddpv++ +e+++G + + ++ +i ++   +++++     + ++a++ p+
  BRENDA::Q8PVT6  90 DRDRATHIIRSNIIRD-----GaSLTDSTVKLSSLFGIKANILPMSDDPVSTYIETAEGIM-HfQDFWIGKR--GEPDVRGvDIRGVSEASISPK 176
                     ****************.....99************************************95.55*****444..56999995556677889**** PP

                     HHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-.....SS....S...-SEEEEE- CS
         UPF0052 169 vleaikeAdlivlgpGslytSiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravg.....kgvakay...vdavlvnt 255
                     vlea ++ + i++gp++++tSi+Pi+ +pg++e l  +k+k+v+vs+i++      +++vs+++ +++ a+g      gva+ y   +d+++ ++
  BRENDA::Q8PVT6 177 VLEAFEKEENILIGPSNPITSIGPIISLPGMRELL--KKKKVVAVSPIIG------NAPVSGPAGKLMPACGievssMGVAEYYqdfLDVFVFDE 263
                     ***********************************..669*********9......****************988884544444666****9998 PP

                     S--- CS
         UPF0052 256 sevp 259
                     ++  
  BRENDA::Q8PVT6 264 RDRA 267
                     8433 PP



Or compare BRENDA::Q8PVT6 to CDD or PaperBLAST