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Align VIMSS101039 to PF01933 (UPF0052)

VIMSS101039 has 325 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    2.9e-97  311.5   0.1    3.2e-97  311.3   0.1    1.0  1  VIMSS101039  


Domain annotation for each sequence (and alignments):
>> VIMSS101039  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  311.3   0.1   3.2e-97   3.2e-97       2     289 ..       7     294 ..       6     298 .. 0.93

  Alignments for each domain:
  == domain 1  score: 311.3 bits;  conditional E-value: 3.2e-97
                  EEEE-CHHHHHHHHHHCCSSCEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-CHHHHHCH-B-SS.SSSSTT-BHHHHHHHHHHHHHS CS
      UPF0052   2 vvlgGGtGlskllrglkevtaeltavvtvaDdggssGelrrelgllaigDirnvlvalidderlleeLfqyRfkg.dgdlaghslgnllLaalaeltg 98 
                  +v+gGGtG+s +l++l++   ++tavvtvaDdggssGelr+ ++l ++gD+rnvl+a++d ++++e++fqyRf++ dg lagh lgnl++a+++e++g
  VIMSS101039   7 TVIGGGTGISIILKSLRNEAVDITAVVTVADDGGSSGELRNAMQLAPPGDLRNVLLAMSDMPKFYERVFQYRFNEsDGALAGHPLGNLIIAGISEMQG 104
                  79***********************************************************************99899******************** PP

                  -HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-EEESTTTGGGG-S...-EEEEEEESTT-....---HHHHHHHHH-SEEEE-SS-IIIIIHH CS
      UPF0052  99 sleeaiealskilkvrgrvlPatddpvelsaeledGeeitgeskisearklkapikrvflepega....eaapevleaikeAdlivlgpGslytSiiP 192
                  s+ +ai+ l k+++++g+++P++++ ++l+a+++dG+e+ ges+i++       i++v+++ + +    +a ++v+eai e+d+ivlgpGsl+tSi+P
  VIMSS101039 105 STYNAIQILTKFFHITGKIYPSSEQALTLHAVFKDGHEVAGESSIAKYPG---MIDHVYVTNTYNdqkpQASRKVVEAILESDMIVLGPGSLFTSILP 199
                  *********************************************66666...8888877665543333699************************** PP

                  HHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-SS....S-SEEEEE-S---HHHHHHHHT.TT--B-B--H.HHHCTT-EEE CS
      UPF0052 193 iLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravgkgvakayvdavlvntsevpeellekyaa.egkepvelDa.kleklgvevi 288
                  +L++p+i+ealr++ka++v+++nimtq Get++fs +dhv+ +++++g++    ++d+vlvn ++vp++++++++  e   +v +D   l +   +vi
  VIMSS101039 200 NLVIPEIKEALRQTKAEVVYICNIMTQYGETEQFSDADHVAVLNQHLGRD----LIDTVLVNVAKVPQAYMNSNKFdEYLVQVDHDFaGLCRAAKRVI 293
                  ************************************************77....*****************988877889999999667766666666 PP

                  E CS
      UPF0052 289 e 289
                  +
  VIMSS101039 294 S 294
                  5 PP



Or compare VIMSS101039 to CDD or PaperBLAST