PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS329885 to PF01933 (CofD)

VIMSS329885 has 333 amino acids

Query:       CofD  [M=290]
Accession:   PF01933.22
Description: 2-phospho-L-lactate transferase CofD
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   9.8e-112  358.8   0.1   1.1e-111  358.6   0.1    1.0  1  VIMSS329885  


Domain annotation for each sequence (and alignments):
>> VIMSS329885  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  358.6   0.1  1.1e-111  1.1e-111       1     290 []      13     304 ..      13     304 .. 0.97

  Alignments for each domain:
  == domain 1  score: 358.6 bits;  conditional E-value: 1.1e-111
         CofD   1 ivvigGGtGlsklLrgLkkytaeitaivtvaDdggssGrlreelgllppgDirnvlvaLadeeklleeLfqyrfkg.dgdlaghslgnllLaalaeit 97 
                  ivvigGGtGl+++L+gL+k+  +ita+vtvaDdggssG +r+ ++++ppgDirnv+vaL+  ++l++++fqyrf+g d+ +agh++gnl++aal+e++
  VIMSS329885  13 IVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVPPGDIRNVMVALSSWPDLYKDIFQYRFQGdDQFFAGHAIGNLIIAALTEMK 110
                  9***************************************************************************88899***************** PP

         CofD  98 gdleeaiealskvlavrgkvlPatdepvelhaeledgtvvegeskiseakkaeakikrvflepedak...alpevleaieeAdlivlgPGslytSilP 192
                  + + +a+++ls++++v+g+v+Pa++e ++lh +++dgt++ ge +i++a+k     +rv+++ ++ k   a++ v++ai+ Ad ivlgPGsl+tSilP
  VIMSS329885 111 SGVFDAVQELSNMMQVDGHVYPAANEALTLHGKFSDGTELVGEAEITAAHK---SLERVWVTDKNGKepqAVQPVIDAIMAADQIVLGPGSLFTSILP 205
                  **********************************************99999...9999999988774444**************************** PP

         CofD 193 nLlvpgiaealreskakvvyvsnimtqpGetdgytvsdhvkailehlgkgyidavlvnteeipeellekyae.egaepvevDaekleklgvevieadl 289
                  nL + +i++a+ es+a+vvy++nimtq+Getd+++ +dhv+++++hlg+++i++vlvnte++pe++++ ++  e +++v++D++ l++++++vi++++
  VIMSS329885 206 NLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFSDADHVRVLNRHLGQNFINTVLVNTEKVPEDYMDFHKFnEVSKQVSHDFRGLREQNCRVISSNF 303
                  ********************************************************************9988799********************998 PP

         CofD 290 l 290
                  l
  VIMSS329885 304 L 304
                  6 PP



Or compare VIMSS329885 to CDD or PaperBLAST