PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS329885 to PF01933 (UPF0052)

VIMSS329885 has 333 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
   2.8e-101  324.7   0.2   3.2e-101  324.5   0.2    1.0  1  VIMSS329885  


Domain annotation for each sequence (and alignments):
>> VIMSS329885  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  324.5   0.2  3.2e-101  3.2e-101       1     292 [.      13     303 ..      13     304 .. 0.96

  Alignments for each domain:
  == domain 1  score: 324.5 bits;  conditional E-value: 3.2e-101
                  EEEEE-CHHHHHHHHHHCCSSCEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH--S-CHHHHHCH-B-SS.SSSSTT-BHHHHHHHHHHHHH CS
      UPF0052   1 vvvlgGGtGlskllrglkevtaeltavvtvaDdggssGelrrelgllaigDirnvlvalidderlleeLfqyRfkg.dgdlaghslgnllLaalaelt 97 
                  +vv+gGGtGl+ +l+gl++   ++tavvtvaDdggssG +r+ ++++++gDirnv+val+  ++l++++fqyRf+g d+ +agh++gnl++aal+e++
  VIMSS329885  13 IVVIGGGTGLPVVLNGLRKQAVDITAVVTVADDGGSSGIIRNYVNVVPPGDIRNVMVALSSWPDLYKDIFQYRFQGdDQFFAGHAIGNLIIAALTEMK 110
                  8***************************************************************************7789****************** PP

                  S-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-EEESTTTGGGG-S...-EEEEEEESTT--...--HHHHHHHHH-SEEEE-SS-IIIIIHH CS
      UPF0052  98 gsleeaiealskilkvrgrvlPatddpvelsaeledGeeitgeskisearklkapikrvflepegae...aapevleaikeAdlivlgpGslytSiiP 192
                    + +a+++ls++++v+g+v+Pa+++ ++l+ +++dG+e+ ge +i++a+k     +rv+++ ++ +   a + v++ai++Ad ivlgpGsl+tSi+P
  VIMSS329885 111 SGVFDAVQELSNMMQVDGHVYPAANEALTLHGKFSDGTELVGEAEITAAHK---SLERVWVTDKNGKepqAVQPVIDAIMAADQIVLGPGSLFTSILP 205
                  9*********************************************99999...999977776665335599************************** PP

                  HHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-SS....S-SEEEEE-S---HHHHHHHHT.TT--B-B--H.HHHCTT-EEE CS
      UPF0052 193 iLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravgkgvakayvdavlvntsevpeellekyaa.egkepvelDa.kleklgvevi 288
                  +L + +i++a+ es+a++v+++nimtqkGetd+fs +dhv+ ++r++g++    ++++vlvnt++vpe++++ ++  e +++v++D   l++++++vi
  VIMSS329885 206 NLTIGNIGRAVCESDAEVVYICNIMTQKGETDNFSDADHVRVLNRHLGQN----FINTVLVNTEKVPEDYMDFHKFnEVSKQVSHDFrGLREQNCRVI 299
                  ************************************************99....*****************99887799*******87********** PP

                  EE-- CS
      UPF0052 289 eadl 292
                  + ++
  VIMSS329885 300 SSNF 303
                  9987 PP



Or compare VIMSS329885 to CDD or PaperBLAST