PaperBLAST – Find papers about a protein or its homologs

 

Align VIMSS35035 to PF01933 (UPF0052)

VIMSS35035 has 331 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence   Description
    ------- ------ -----    ------- ------ -----   ---- --  --------   -----------
    1.5e-67  214.0   0.0    1.8e-67  213.7   0.0    1.0  1  VIMSS35035  


Domain annotation for each sequence (and alignments):
>> VIMSS35035  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  213.7   0.0   1.8e-67   1.8e-67       1     257 [.       3     294 ..       3     318 .. 0.93

  Alignments for each domain:
  == domain 1  score: 213.7 bits;  conditional E-value: 1.8e-67
                 EEEEE-CHHHHHHHHHHCCSS...............CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH...--S-C..........HHHHHCH CS
     UPF0052   1 vvvlgGGtGlskllrglkevt...............aeltavvtvaDdggssGelrrelgllaigDirnvlval...idder..........lleeLfq 71 
                 v+vl+GG+G++++l g++++                ++l+avv+v+Dd +++G       l++++D+++++++l   +d +r          +++eL++
  VIMSS35035   3 VTVLAGGVGGARFLLGVQQLLglgqfaansahsdadHQLSAVVNVGDDAWIHG-------LRVCPDLDTCMYTLgggVDPQRgwgqrdetwhAMQELVR 94 
                 89******************9********************************.......****************98888899999999********* PP

                 -B-SS......SSSSTT-BHHHHHHHHHHHHHS.-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-E.....EE.STTTGGGG-S....-EEE. CS
     UPF0052  72 yRfkg......dgdlaghslgnllLaalaeltg.sleeaiealskilkvrgrvlPatddpvelsaeledGee.....it.geskiseark.lkapikr. 155
                 y ++       d+dla+h++++++L+a     g +l++++eal++++++++r+lPatdd++e++++++d        i+ +e+++   r+ +++p+++ 
  VIMSS35035  95 YGVQPdwfelgDRDLATHLVRTQMLQA-----GyPLSQITEALCDRWQPGARLLPATDDRCETHVVITDPVDesrkaIHfQEWWV---RYrAQVPTHSf 185
                 *6665**********************.....99*********************************8876677777********...88899****** PP

                 EEEESTT----HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-.....SS....S.. CS
     UPF0052 156 vflepegaeaapevleaikeAdlivlgpGslytSiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravg.....kgvakay.. 247
                 +f+++e+++aa e+++a+++Ad+i+l+p+++++Si++iL+vpgi++alre++a++v+ s+i++      +++++++++++++ +g     ++v+++y  
  VIMSS35035 186 AFVGAEKSSAATEAIAALADADIIMLAPSNPVVSIGAILAVPGIRAALREATAPIVGYSPIIG------EKPLRGMADTCLSVIGvdstaAAVGRHYga 278
                 **************************************************************9......999999999999999998888666667788 PP

                 ......-SEEEEE-S- CS
     UPF0052 248 ......vdavlvntse 257
                       +d +lv++++
  VIMSS35035 279 rcatgiLDCWLVHDGD 294
                 888888*****98873 PP



Or compare VIMSS35035 to CDD or PaperBLAST