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Align VIMSS537310 to PF01933 (UPF0052)

VIMSS537310 has 343 amino acids

Query:       UPF0052  [M=293]
Accession:   PF01933.18
Description: Uncharacterised protein family UPF0052
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence    Description
    ------- ------ -----    ------- ------ -----   ---- --  --------    -----------
    1.3e-65  207.6   0.0    1.5e-65  207.3   0.0    1.0  1  VIMSS537310  


Domain annotation for each sequence (and alignments):
>> VIMSS537310  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  207.3   0.0   1.5e-65   1.5e-65       1     256 [.       9     305 ..       9     332 .. 0.94

  Alignments for each domain:
  == domain 1  score: 207.3 bits;  conditional E-value: 1.5e-65
                  EEEEE-CHHHHHHHHHHCCSS.....................CEEEEEE-----SHHHHHHHHHHTS---HHHHHHHHHH...--S-C.......... CS
      UPF0052   1 vvvlgGGtGlskllrglkevt.....................aeltavvtvaDdggssGelrrelgllaigDirnvlval...idder.......... 64 
                  v+vl GG+G++++l g+++++                     +elta+v+++Dd +++G       l++++D+++++++l   +d er          
  VIMSS537310   9 VTVLVGGVGGARFLLGVQQLFglgqfraqrhthgrpdtaagsHELTAIVNIGDDAWIHG-------LRVCPDLDTCMYTLgggVDPERgwghrdetwh 99 
                  89*********************************************************.......*****************99999********** PP

                  HHHHHCH-B-SS......SSSSTT-BHHHHHHHHHHHHHS.-HHHHHHHHHHHTT-SSEEEES-SS--EEEEEETTS-E.....EE.STTTGGGG-S. CS
      UPF0052  65 lleeLfqyRfkg......dgdlaghslgnllLaalaeltg.sleeaiealskilkvrgrvlPatddpvelsaeledGee.....it.geskiseark. 148
                  ++eeL++y ++       d+d+ +h++++++L+a     g +l+++++al++++++++r+lP++dd++e++++++d +      i+ +e+++   r+ 
  VIMSS537310 100 AKEELARYGVQPdwfglgDRDIGTHLVRTQMLNA-----GyPLTQITAALCDRWQPGARLLPVSDDRCETHVVITDPDDgsrraIHfQEWWV---RYr 189
                  ********6665**********************.....99*********************************8877777799********...888 PP

                  ...-EEE.EEEESTT----HHHHHHHHH-SEEEE-SS-IIIIIHHHHTSCCHHHHHHH-SSEEEEE--SB--TTTSTT-BHHHHHHHHHHCH-..... CS
      UPF0052 149 lkapikr.vflepegaeaapevleaikeAdlivlgpGslytSiiPiLlvpgiaealreskakkvlvsnimtqkGetdgfsvsdhvkaieravg..... 240
                  +++p+++ +f+++e+a a+ e ++ai++Ad+i+++p+++++S+++iL+vpg++ alr++ a++v+ s+i++      g++++++++a+++ +g     
  VIMSS537310 190 AQVPTHSfAFVGAEKAAATTETIAAIADADVILIAPSNPVVSVGAILAVPGVRGALRAAGAPIVGYSPIIG------GKPLRGMADACLSVIGvesta 281
                  99********************************************************************9......****************98888 PP

                  SS....S........-SEEEEE-S CS
      UPF0052 241 kgvakay........vdavlvnts 256
                  ++v+++y        +d +lv ++
  VIMSS537310 282 EAVGRHYgarrgtgiLDCWLVSQD 305
                  666677788888888*****9665 PP



Or compare VIMSS537310 to CDD or PaperBLAST